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Report for CCDS26472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26472.1 Public Mus musculus 13 Gcm2 23 108 98 CCDS HistoryNCBI Gene:107889Re-query CCDS DB by CCDS ID:26472.1Re-query CCDS DB by GeneID:107889See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021791.7 ENSMUSP00000021791.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021791.7Link to Ensembl Protein Viewer:ENSMUSP00000021791.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021791Re-query CCDS DB by Protein ID:ENSMUSP00000021791
Original member Current member NCBI NM_008104.2 NP_032130.2 Accepted alive Link to Nucleotide Sequence:NM_008104.2Link to Protein Sequence:NP_032130.2Re-query CCDS DB by Nucleotide ID:NM_008104Re-query CCDS DB by Protein ID:NP_032130Link to BLAST:NP_032130.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032130.2 504 O09102 504 98.6111% 0 7

Chromosomal Locations for CCDS 26472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 41102757 41103689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41104569 41104694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41105411 41105523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41105649 41105901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41109865 41109954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCCAGCAGACAGCACGCAGGACGAGGATGCTGTGCTCTCCTACGGGATGAAACTCACGTGGGACATCA
ATGACCCACAGATGCCTCAGGAACCAACCCACTTTGACCACTTCCGGGAGTGGCCTGATGGCTACGTGCG
CTTCATCTACAGCAGCCAGGAGAAGAAGGCTCAGCGCCACCTGAGTGGCTGGGCCATGCGCAACACCAAC
AACCACAATGGCCACATCCTCAAGAAGTCCTGCCTGGGCGTGGTGGTGTGTGCACGCGCTTGCGCCCTGA
AGGATGGCTCGCACCTGCAGCTGAGGCCAGCCATCTGTGACAAGGCCCGGCTGAAGCAACAAAAGAAAGC
TTGCCCCAACTGTCACTCACCTTTGGAGCTGGTTCCTTGCCGAGGGCACAGCGGATACCCTGTCACCAAC
TTCTGGAGACTTGATGGCAATGCAATTTTTTTTCAGGCCAAAGGAGTTCATGATCACCCCAGACCAGAGA
GTAAGTCAGAGACAGAAGGCAGAAGAAGTGCCCTCAAGAGACAGATGGCTTCTTTCTACCAACCCCAGAA
AAGGAGATCAGGGGAGCCTGAGGCAAGAAGCACTCAGGACATCAGGGGACACCTCAATAGCACGGCTGCC
CTGGAACCCACAGAACTATTTGATATGACTGCTGATACCAGCTTCCCTATTCCAGGGCAGCCCTCCCCTT
CGTTCCCAAACTCTGATGTCTACAGAGTTACCTGTGACCTGCCCACCTTTCAAGGAGATATAATACTGCC
CTTTCAGAAATATCCAAATCCAAGCATTTATTTCCCCGGGCCACCTTGGGGCTATGAGTTGGCAAGTTCT
GGGGTTACAGGTTCGAGTCCATATTCCACCCTGTATAAAGATTCCTCCGAGGTCCCCGATGACCCAGATT
GGATTCCTCTAAACTCACTACAGTATAATGTCAGTTCCTATGGCAGCTATGAGAGAACCTTGGATTTCAC
AGCTAGGTATCATAGCTGGAAACCAACACACGGGAAGCCCAGCCTTGAGGAGAAGGTTGACTGTGAGCAA
TGCCAGGCTGTGCCCACATTGCCTTATTACAACCTAGAGCTGCCCTGCAGGTACCTGCCAGTGCCAGCAG
CGGGTAGCCAGGCTCTGCAGACAGTAATCACCACCACAGTGGCTTACCAGGCCTACCAGCACCCTGCTCT
GAAACACGGTGACAGCATGCAGGAGGTTAGCAGCCTTGCCAGCTGCACCTATGCCTCGGAAAACCTCCCA
ATGCCCATCTATCCACCAGCCTTAGACCCTCAAGAGGGAGTCATTCAGGCAGTCTCTCCTTCAGGGAGAG
CCCCTCTGAAAGTCCCTGGAGACTGCCAGGCCCCCAGACCCACTCTGGATTTTCCTCAAGAAGCAGATCC
CTCCGGGACAGATGGAGCAGATGTGTGGGATGTGTGTCTGTCTGGGGTGGGCTCTGTGATGGGTTACTTA
GATAGGACAGGGCAGCCCTTTAGCTTTGACAATGAGGACTTTTAG

Translation (504 aa):
MPADSTQDEDAVLSYGMKLTWDINDPQMPQEPTHFDHFREWPDGYVRFIYSSQEKKAQRHLSGWAMRNTN
NHNGHILKKSCLGVVVCARACALKDGSHLQLRPAICDKARLKQQKKACPNCHSPLELVPCRGHSGYPVTN
FWRLDGNAIFFQAKGVHDHPRPESKSETEGRRSALKRQMASFYQPQKRRSGEPEARSTQDIRGHLNSTAA
LEPTELFDMTADTSFPIPGQPSPSFPNSDVYRVTCDLPTFQGDIILPFQKYPNPSIYFPGPPWGYELASS
GVTGSSPYSTLYKDSSEVPDDPDWIPLNSLQYNVSSYGSYERTLDFTARYHSWKPTHGKPSLEEKVDCEQ
CQAVPTLPYYNLELPCRYLPVPAAGSQALQTVITTTVAYQAYQHPALKHGDSMQEVSSLASCTYASENLP
MPIYPPALDPQEGVIQAVSPSGRAPLKVPGDCQAPRPTLDFPQEADPSGTDGADVWDVCLSGVGSVMGYL
DRTGQPFSFDNEDF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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