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Report for CCDS20845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20845.1 Public Mus musculus 7 Slc8a2 23 108 98 CCDS HistoryNCBI Gene:110891Re-query CCDS DB by CCDS ID:20845.1Re-query CCDS DB by GeneID:110891See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211649.1 ENSMUSP00000147497.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211649.1Link to Ensembl Protein Viewer:ENSMUSP00000147497.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211649Re-query CCDS DB by Protein ID:ENSMUSP00000147497
Original member Current member NCBI NM_148946.3 NP_683748.1 Accepted alive Link to Nucleotide Sequence:NM_148946.3Link to Protein Sequence:NP_683748.1Re-query CCDS DB by Nucleotide ID:NM_148946Re-query CCDS DB by Protein ID:NP_683748Link to BLAST:NP_683748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683748.1 921 Q8K596-1 921 100% 0 0

Chromosomal Locations for CCDS 20845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16133845 16134519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16140504 16141168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16144931 16145353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16150341 16150444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16150574 16150591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16152819 16152943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16153195 16153294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16157147 16157425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16158804 16159180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2766 nt):
ATGGCTCCCTTGGCTTTGATGGGGGTTGTTCTCCTTCTGGGGGTACCCCACTGCTTGGGGGAAGCCACTC
CGACCCCTTCCCTACCGCCTCCCACAGCTAATGACAGCGATGCCAGCCCAGAAGGCTGCCAAGGTTCCTA
CCGCTGCCAACCAGGTGTGCTGCTGCCTGTGTGGGAACCCGAGGACCCATCGCTGGGCGACAAGGTTGCA
CGGGCCGTGGTGTACTTTGTGGCCATGGTCTACATGTTCCTGGGTGTGTCTATCATTGCCGATCGATTTA
TGGCATCCATTGAGGTCATCACATCCAAGGAGAAAGAGATCACCATCACCAAGGCAAATGGGGAGACCAG
CGTGGGCACGGTGCGCATCTGGAACGAGACGGTGTCCAACCTTACACTCATGGCCCTGGGCTCCTCAGCG
CCTGAGATTCTGTTGACTGTCATCGAGGTCTGTGGCCACAACTTCCAGGCCGGTGAGCTAGGCCCAGGCA
CCATCGTGGGCAGTGCCGCCTTCAACATGTTTGTGGTCATTGCTGTTTGTGTGTATGTCATCCCGGCTGG
CGAGAGCCGTAAGATCAAGCACCTGAGGGTCTTCTTTGTCACAGCCTCCTGGAGCATCTTTGCCTATGTC
TGGCTTTATCTCATTCTAGCAGTTTTCTCCCCAGGTGTAGTCCAGGTGTGGGAGGCACTGCTCACACTGA
TCTTCTTCCCGGTGTGTGTGGTGTTTGCCTGGATGGCGGACAAGCGACTGCTCTTCTACAAGTACGTGTA
CAAGCGCTACCGCACCGACCCTCGCAGTGGAATCATCATCGGGGCAGAGGGAGACCCACCCAAGAGCATC
GAGCTGGACGGCACATTCGTGGGCACTGAGGTCCCTGGCGAGCTGGGCGCATTGGGCACAGGTCCTGCTG
AGGCGCGTGAACTAGATGCCAGCCGGCGTGAGGTCATCCAGATCCTTAAGGACTTGAAGCAGAAGCACCC
GGATAAGGACCTGGAGCAGCTGATGGGCATCGCCAAGTACTATGCACTGCTGCACCAGCAGAAGAGCCGC
GCCTTCTACCGCATCCAGGCCACGCGGCTGATGACAGGTGCGGGCAATGTGCTGCGCAGACATGCTGCGG
ATGCTGCCCGCAGGCCGGGAGCCACCGATGGTGCCCCCGATGATGAGGACGATGGTGCCAGTCGCATCTT
CTTTGAGCCCAGCCTCTATCACTGCCTGGAAAACTGCGGGTCAGTGCTGCTGTCCGTGGCTTGCCAGGGC
GGTGAGGGCAACAGCACCTTCTACGTGGACTACCGTACCGAGGACGGTTCTGCAAAGGCAGGCTCCGATT
ATGAGTACAGCGAGGGCACGCTGGTGTTCAAGCCCGGGGAGACGCAGAAGGACCTGCGCATCGGGATCAT
CGACGACGACATCTTCGAGGAGGATGAGCACTTCTTCGTGAGGCTGCTGAACCTGCGTGTGGGCGATGCT
CAGGGCATGTTCGAGCCCGACGGCGGTGGGCGGCCCAAGGGGCGGCTGGTGGCGCCGCTGCTGGCCACTG
TCACCATCCTGGACGACGACCACGCGGGCATCTTCTCCTTCCAGGACCGCCTGCTGCATGTGAGCGAGTG
CATGGGCACTGTGGATGTGCGCGTGGTTCGCAGCTCGGGCGCCCGTGGCACTGTACGCCTCCCCTACCGC
ACAGTGGACGGCACGGCCCGTGGCGGTGGTGTACATTACGAGGATGCTTGTGGAGAGCTGGAGTTCGGCG
ATGATGAGACCATGAAAACTCTTCAGGTCAAGATAGTGGATGATGAAGAGTATGAGAAGAAGGACAACTT
CTTCATTGAGCTGGGCCAGCCCCAGTGGCTTAAGCGAGGCATCTCAGCTCTGCTACTCAACCAAGGGAAT
GGAGACAAGAAGATAACTGCAGAGCAGGAGGAGGCCCAGAGGATAGCAGAGATGGGCAAGCCAGTTCTTG
GGGAGAACAATCGCCTCGAGGTCATCATCGAGGAGTCTTATGACTTTAAGAACACGGTGGATAAACTCAT
AAAGAAAACGAACCTGGCCTTGGTGATTGGGACTCACTCATGGAGGGAGCAGTTTATAGAGGCAGTTACC
GTAAGCGCAGGGGACGAGGAGGAGGATGAGGATGGACCTCGTGAGGAGCGGCTGCCGTCCTGCTTTGACT
ACGTGATGCACTTCCTGACGGTATTCTGGAAAGTTCTATTCGCCTGCGTTCCACCCACGGAGTACTGCAA
TGGCTGGGCCTGCTTTGGTGTCTGCATCCTGGTCATTGGTGTGCTCACTGCCCTCATCGGAGACCTGGCC
TCACACTTTGGGTGCACCGTGGGCCTCAAGGACTCAGTCAACGCCGTGGTCTTCGTAGCCCTGGGCACCT
CCATCCCTGACACGTTCGCCAGCAAGGTGGCCGCGCTGCAGGACCAGTGTGCCGACGCGTCCATCGGTAA
CGTGACCGGCTCCAATGCGGTGAACGTGTTCCTGGGCCTGGGTGTGGCCTGGTCGGTGGCAGCGGTATAC
TGGGCGGTGCAGGGTCGCCCCTTCGAGGTGCGTGCAGGCACGCTGGCCTTCTCGGTCACGCTGTTCACCG
TCTTCGCCTTCGTGTGCATCGCAGTGCTGTTGTACCGGCGCCGGCCGCAGATTGGCGGCGAGCTGGGCGG
CCCGCGGGGACCCAAGCTGGCCACCACCGCTCTCTTCCTGGGCCTCTGGTTCCTCTACATTCTCTTCTCC
AGCCTGGAGGCTTACTGCCACATCCGGGGCTTCTAG

Translation (921 aa):
MAPLALMGVVLLLGVPHCLGEATPTPSLPPPTANDSDASPEGCQGSYRCQPGVLLPVWEPEDPSLGDKVA
RAVVYFVAMVYMFLGVSIIADRFMASIEVITSKEKEITITKANGETSVGTVRIWNETVSNLTLMALGSSA
PEILLTVIEVCGHNFQAGELGPGTIVGSAAFNMFVVIAVCVYVIPAGESRKIKHLRVFFVTASWSIFAYV
WLYLILAVFSPGVVQVWEALLTLIFFPVCVVFAWMADKRLLFYKYVYKRYRTDPRSGIIIGAEGDPPKSI
ELDGTFVGTEVPGELGALGTGPAEARELDASRREVIQILKDLKQKHPDKDLEQLMGIAKYYALLHQQKSR
AFYRIQATRLMTGAGNVLRRHAADAARRPGATDGAPDDEDDGASRIFFEPSLYHCLENCGSVLLSVACQG
GEGNSTFYVDYRTEDGSAKAGSDYEYSEGTLVFKPGETQKDLRIGIIDDDIFEEDEHFFVRLLNLRVGDA
QGMFEPDGGGRPKGRLVAPLLATVTILDDDHAGIFSFQDRLLHVSECMGTVDVRVVRSSGARGTVRLPYR
TVDGTARGGGVHYEDACGELEFGDDETMKTLQVKIVDDEEYEKKDNFFIELGQPQWLKRGISALLLNQGN
GDKKITAEQEEAQRIAEMGKPVLGENNRLEVIIEESYDFKNTVDKLIKKTNLALVIGTHSWREQFIEAVT
VSAGDEEEDEDGPREERLPSCFDYVMHFLTVFWKVLFACVPPTEYCNGWACFGVCILVIGVLTALIGDLA
SHFGCTVGLKDSVNAVVFVALGTSIPDTFASKVAALQDQCADASIGNVTGSNAVNVFLGLGVAWSVAAVY
WAVQGRPFEVRAGTLAFSVTLFTVFAFVCIAVLLYRRRPQIGGELGGPRGPKLATTALFLGLWFLYILFS
SLEAYCHIRGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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