NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17884.1 Public Mus musculus 3 Selenof 23 108 98 CCDS HistoryNCBI Gene:93684Re-query CCDS DB by CCDS ID:17884.1Re-query CCDS DB by GeneID:93684See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 17884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082437.9 ENSMUSP00000046910.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082437.9Link to Ensembl Protein Viewer:ENSMUSP00000046910.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000082437Re-query CCDS DB by Protein ID:ENSMUSP00000046910
Original member Current member NCBI NM_053102.2 NP_444332.1 Accepted alive Link to Nucleotide Sequence:NM_053102.2Link to Protein Sequence:NP_444332.1Re-query CCDS DB by Nucleotide ID:NM_053102Re-query CCDS DB by Protein ID:NP_444332Link to BLAST:NP_444332.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444332.1 162 Q9ERR7 162 99.3827% 0 1

Chromosomal Locations for CCDS 17884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144570725 144570799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144577586 144577753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144590612 144590675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144594901 144594950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144596823 144596954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 93

Nucleotide Sequence (489 nt):
ATGGCGGCAGGGCAGGGTGGGTGGCTGCGGCCCGCTCTGGGGCTGCGCTTGCTGCTGGCGACTGCGTTTC
AAGCGGCGTCTGCTCTGGGGGCAGAGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTT
GCTCTGCAGCTCTTGCGATCTTCTTGGACAGTTTAATCTGCTCCCACTGGATCCTGTTTGCAGAGGGTGC
TGTCAGGAAGAAGCACAATTTGAAACCAAAAAGCTGTATGCAGGAGCCATCCTTGAAGTCTGCGGATGAA
AATTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGAAGTGATAAACCCAAACTCTTCAGAGGTCTACA
GATCAAGTATGTTCGAGGCTCAGACCCTGTACTAAAGCTTTTGGACGACAACGGGAACATTGCTGAAGAA
CTAAGCATCCTCAAGTGGAACACAGACAGTGTGGAAGAGTTCCTGAGCGAGAAGTTGGAACGCATATAA

Translation (162 aa):
MAAGQGGWLRPALGLRLLLATAFQAASALGAEFASEACRELGFSSNLLCSSCDLLGQFNLLPLDPVCRGC
CQEEAQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEE
LSILKWNTDSVEEFLSEKLERI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH