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Report for CCDS83962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83962.1 Public Mus musculus 12 Dtd2 23 108 98 CCDS HistoryNCBI Gene:328092Re-query CCDS DB by CCDS ID:83962.1Re-query CCDS DB by GeneID:328092See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085404.9 ENSMUSP00000082525.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085404.9Link to Ensembl Protein Viewer:ENSMUSP00000082525.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085404Re-query CCDS DB by Protein ID:ENSMUSP00000082525
Original member Current member NCBI NM_001347404.1 NP_001334333.1 Accepted alive Link to Nucleotide Sequence:NM_001347404.1Link to Protein Sequence:NP_001334333.1Re-query CCDS DB by Nucleotide ID:NM_001347404Re-query CCDS DB by Protein ID:NP_001334333Link to BLAST:NP_001334333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334333.1 166 Q8BHA3-2 166 100% 0 0

Chromosomal Locations for CCDS 83962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51988807 51988855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51999603 51999873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52004879 52004948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52006375 52006485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGCGGACGGTGGTCGTGTGGCCCAGGCTCGTGCGCTCCTGCAGCAGTGCCTGCACGCTCGCCTGCAAG
TGCGCCCGGCCGATGGAGACGCCGCGGCGCAGTGGGTGGAGATTCGGAGAGGATTGGTGATCTATGTGTG
TTTCTTCAAGGGAGCTGACACAGACCTTCTCCCCAAAATGGTTAATACGCTGTTAAATGTGAAGTTAAGC
GAAACGGAAACCGGCAAGCACGTCTCCATCCTCGATCTGCCTGGCGATGTTCTGATCATCCCGCAAGCCA
CCCTCGGGGGCAGGGTGAAAGGGCGGAGCATGCAGTACCACTCTAACTCTGGAAAGGAGGAGGGCTCAGA
ACTGTACTCCCAGTTTGTGAGTCTGTGTGAAAAAGCCGTGGCCAACAACACCAAGAGTGTAGAAGCGGGG
GTTGCGGTGGCGCACGGCACGTACGGGAACAGGTGGAGCCACACACAGAAGGAGTTGCAGACATTGCTCA
CAGCCTTTTGA

Translation (166 aa):
MADGGRVAQARALLQQCLHARLQVRPADGDAAAQWVEIRRGLVIYVCFFKGADTDLLPKMVNTLLNVKLS
ETETGKHVSILDLPGDVLIIPQATLGGRVKGRSMQYHSNSGKEEGSELYSQFVSLCEKAVANNTKSVEAG
VAVAHGTYGNRWSHTQKELQTLLTAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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