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Report for CCDS30210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30210.1 Public Mus musculus X Abcd1 23 108 98 CCDS HistoryNCBI Gene:11666Re-query CCDS DB by CCDS ID:30210.1Re-query CCDS DB by GeneID:11666See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002084.13 ENSMUSP00000002084.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002084.13Link to Ensembl Protein Viewer:ENSMUSP00000002084.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002084Re-query CCDS DB by Protein ID:ENSMUSP00000002084
Original member Current member NCBI NM_007435.2 NP_031461.1 Accepted alive Link to Nucleotide Sequence:NM_007435.2Link to Protein Sequence:NP_031461.1Re-query CCDS DB by Nucleotide ID:NM_007435Re-query CCDS DB by Protein ID:NP_031461Link to BLAST:NP_031461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031461.1 736 P48410 736 100% 0 0

Chromosomal Locations for CCDS 30210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73717031 73717930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73720914 73721094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73728984 73729126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73729209 73729377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73730794 73730888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73734009 73734154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73734462 73734607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73736790 73736874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73737103 73737228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73737312 73737531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGCCGGTGCTCTCCACTCCCCGGCCCTCACGGGTGACCACGCTGAAGCGCACAGCTGTGGTCCTGGCCC
TCACAGCCTATGGAGTCCACAAAATCTACCCTCTAGTACGGCAGTGTCTGACTCCTGCCAGAGGTCCTCA
GGTGCCAGCTGGGGAGCCCACTCAAGAGGCCTCTGGAGCCACCGCAACCAAGGCTGGCATGAACCGGGTA
TTCCTGCAGCGGCTCTTGGCGCTCCTGAGGCTGCTGTTCCCCCGAGTCTTGTGCCGGGAAACAGGGCTGC
TGGCCCTGCATTCTGCTGCCCTGGTAAGCCGAACTTTCCTGTCTGTGTATGTTGCCCGCCTGGACGGCAG
ACTGGCCCGCTGCATTGTACGTAAGGACCCGCGGGCCTTTAGCTGGCAACTGCTGCAGTGGCTCCTCATC
GCCCTTCCTGCCACTTTCATCAACAGTGCCATCCGCTACCTAGAGGGCCAGCTGGCTCTTTCTTTCCGAA
GCCGTCTAGTAGCTCATGCCTATGGACTCTACTTCTCCCAACAGACTTACTACCGAGTAAGCAACATGGA
TGGACGACTTCGAAACCCTGATCAGTCTCTGACAGAGGATGTGGTAGCCTTTGCTGCCTCTGTAGCCCAC
CTTTATTCCAACCTGACCAAGCCACTCCTGGATGTGGCTGTGACCTCCTACACTCTCCTTCGAGCTGCCC
GATCCCGAGGAGCTGGCACAGCCTGGCCCTCAGCCATCGCTGGCCTGGTGGTGTTCCTCACAGCCAACGT
GCTTCGAGCCTTCTCTCCCAAGTTTGGGGAGCTAGTGGCAGAGGAGGCACGGCGAAAGGGGGAACTGCGC
TACATGCACTCTCGAGTGGTGGCCAACTCAGAGGAAATTGCCTTCTACGGGGGCCATGAGGTGGAACTGG
CACTACTACAGCACTCCTATCAAGACCTAGCTTCACAGATCAACCTCATCCTGCTTGAGCGCCTATGGTA
TGTCATGCTGGAACAGTTCCTCATGAAATATGTGTGGAGTGCATCTGGCCTGCTCATGGTAGCTGTCCCC
ATCATCACAGCCACTGGCTATGCAGAGTCAGACTCAGAAGCCATGAAGAAGGCAGCCTTGGAAATGAAGG
AAGAGGAGCTGGTTAGTGAGCGTACAGAAGCTTTCACCATTGCCCGAAACCTCCTCACAGCTGCTGCAGA
TGCCACCGAAAGGATCATGTCATCTTATAAGGAGGTGACAGAGCTGGCTGGCTACACAGCCAGGGTGTAC
GAGATGTTCCAGGTATTTGAAGATGTCAAACACTGTCGTTTTAAGAGGACAGGAGATCTAGAGGAGGCTC
AGGCTGGGCCTGGGGTCATGGTACAGTCTGGTGTCCATGTAGAGGGGCCCCTGAAGATCCAAGGCCAAGT
TGTGGATGTGGAGCAGGGGATCATCTGTGAGAACATCCCTATCATCACACCCACTGGAGAGGTGGTGGTG
GCCAGCCTCAACATCAGGGTGGAGGAAGGCATGCACCTGCTCATCACAGGCCCCAATGGCTGTGGCAAGA
GTTCTCTGTTCCGAATCCTAGGTGGACTCTGGCCCACATACAGTGGTGTACTCTATAAGCCCCCACCCCA
GCGCATGTTCTATATCCCTCAGAGGCCCTACATGTCCGTGGGCTCCTTGCGTGACCAAGTGATCTATCCC
GACTCTGCGGAAGACATGCGGAGGAAGGGCTGCTCGGAGCAGCAGCTGGAAGCAATCCTGGGCATCGTGC
ATCTCCGCCACATCCTGCAACGGGAGGGAGGTTGGGAGGCAGTGTGTGACTGGAAGGACGTCCTGTCTGG
AGGTGAGAAGCAGAGGATTGGTATGGCGCGCATGTTCTACCACAGGCCCAAGTACGCCCTCCTGGATGAG
TGCACTAGTGCCGTGAGCATTGATGTGGAAGGCAAGATCTTCCAAGCAGCCAAAGATGCTGGTATCGCAC
TGCTCTCCATCACCCATCGACCCTCCCTATGGAAGTACCACACACACTTGCTGCAGTTTGATGGGGAAGG
AGGCTGGAAGTTTGAGAAGCTGGATTCTGCTGCCCGCCTGAGCCTGACTGAAGAGAAGCAGCGCCTGGAG
CAGCAACTGGCGGGCATCCCCAAGATGCAGGGGCGCCTTCAGGAGCTCCGCCAGATCCTTGGCGAAGCTG
CAGCTCCAGTTCAACCCCTGGTCCCAGGAGTCCCCACTTGA

Translation (736 aa):
MPVLSTPRPSRVTTLKRTAVVLALTAYGVHKIYPLVRQCLTPARGPQVPAGEPTQEASGATATKAGMNRV
FLQRLLALLRLLFPRVLCRETGLLALHSAALVSRTFLSVYVARLDGRLARCIVRKDPRAFSWQLLQWLLI
ALPATFINSAIRYLEGQLALSFRSRLVAHAYGLYFSQQTYYRVSNMDGRLRNPDQSLTEDVVAFAASVAH
LYSNLTKPLLDVAVTSYTLLRAARSRGAGTAWPSAIAGLVVFLTANVLRAFSPKFGELVAEEARRKGELR
YMHSRVVANSEEIAFYGGHEVELALLQHSYQDLASQINLILLERLWYVMLEQFLMKYVWSASGLLMVAVP
IITATGYAESDSEAMKKAALEMKEEELVSERTEAFTIARNLLTAAADATERIMSSYKEVTELAGYTARVY
EMFQVFEDVKHCRFKRTGDLEEAQAGPGVMVQSGVHVEGPLKIQGQVVDVEQGIICENIPIITPTGEVVV
ASLNIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYSGVLYKPPPQRMFYIPQRPYMSVGSLRDQVIYP
DSAEDMRRKGCSEQQLEAILGIVHLRHILQREGGWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDE
CTSAVSIDVEGKIFQAAKDAGIALLSITHRPSLWKYHTHLLQFDGEGGWKFEKLDSAARLSLTEEKQRLE
QQLAGIPKMQGRLQELRQILGEAAAPVQPLVPGVPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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