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Report for CCDS52485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52485.1 Public Mus musculus 8 Cul4a 23 108 98 CCDS HistoryNCBI Gene:99375Re-query CCDS DB by CCDS ID:52485.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016680.13 ENSMUSP00000016680.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016680.13Link to Ensembl Protein Viewer:ENSMUSP00000016680.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000016680Re-query CCDS DB by Protein ID:ENSMUSP00000016680
Original member Current member NCBI NM_146207.3 NP_666319.2 Accepted alive Link to Nucleotide Sequence:NM_146207.3Link to Protein Sequence:NP_666319.2Re-query CCDS DB by Nucleotide ID:NM_146207Re-query CCDS DB by Protein ID:NP_666319Link to BLAST:NP_666319.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666319.2 759 Q3TCH7 759 100% 0 0

Chromosomal Locations for CCDS 52485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13105756 13105903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13106194 13106309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13115470 13115573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13121677 13121746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13122807 13122880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13123467 13123629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13123870 13123959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13124791 13124873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13127710 13127777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13133123 13133241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13133649 13133841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13135865 13135969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13136133 13136243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13136336 13136421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13136796 13136903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13140203 13140316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13142493 13142598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13142962 13143134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13144277 13144429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13146532 13146627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGGCGGACGAGGGCCCTCGGAAGGGCAGCGTCTCGGCTCTCATGGGCCGCACCAACGGCCTCACCAAGC
CCGCGGCGTTGGCCGGTGGCCCCGCCAAGCCGGGGGGCACGGGAGGCTCCAGGAAGCTGGTCATCAAGAA
CTTCCGAGACAGGCCGCGGCTGCCTGACAACTACACTCAGGACACGTGGCGGAAGCTTCACGAAGCGGTC
AAGGCCATCCAGAGCAGCACATCCATCAGGTACAACCTGGAGGAGCTGTACCAGGCTGTTGAAAATCTTT
GTTCTCACAAAGTCTCCCCAACGCTCTACAAGCAGCTGCGCCAGGTCTGTGAAGACCATGTCCAGGCCCA
GATCCTCCCATTCAGAGAAGACTCACTAGACAGCGTTTTATTTCTAAAGAAGATTAACACATGCTGGCAA
GATCACTGCAGACAAATGATCATGATCAGAAGCATCTTCCTGTTTCTGGATCGAACCTACGTCCTCCAGA
ATTCCATGCTGCCTTCTATCTGGGACATGGGCCTAGAGCTGTTTAGGAACCACATCATCAGCGACAGGAT
GGTGCAGAGTAAGACCATTGATGGGATCCTGCTGCTGATTGGGCGTGAACGAAGTGGAGAGGCTGTGGAC
AGGAGTCTGCTTCGGAGTTTGCTAAGCATGCTCTCAGATCTCCAGGTGTACAAAGACTCATTTGAGCTGA
AGTTCTTGGAAGAGACTAACTGTCTATACGCTGCTGAAGGCCAGAGGCTGATGCAGGACAGGGAGGTTCC
AGAATACCTTAACCATGTGAGCAAACGTCTAGAAGAGGAAGCAGACCGAGTGATCACCTACTTAGACCAC
AGCACACAAAAACCGTTGATTGCCTGTGTGGAGAAACAGCTGTTAGGAGAACATTTGACAGCAATTCTAC
AGAAAGGCCTAGAGCACCTGCTGGATGAGAACAGGGTGCCCGACCTCACCCAGATGTACCAGCTCTTCAG
CCGGGTGAAAGGAGGGCAGCATGCGCTGCTGCAGCACTGGAGCGAGTACATCAAGACCTTTGGAACAACC
ATTGTCATCAATCCTGAGAAAGACAAAGACATGGTCCAAGACCTGCTGGACTTTAAGGACAAAGTGGACC
ACGTGGTGGAGGTGTGCTTCCAGAGGAACGAGCGCTTCATCAACCTGATGAAGGAGTCCTTCGAGACGTT
CATCAACAAGAGACCAAACAAGCCTGCAGAGCTCATTGCCAAGCACGTGGACTCAAAGTTACGGGCCGGC
AACAAAGAAGCCACAGATGAGGAACTGGAGAGGATCCTGGACAAGATCATGATTCTCTTCCGTTTCATCC
ATGGTAAAGATGTCTTTGAAGCGTTTTATAAGAAAGACTTAGCAAAAAGGCTGCTGGTGGGGAAGAGCGC
GTCGGTGGACGCGGAGAAGTCCATGCTGTCGAAGCTCAAGCACGAGTGCGGAGCTGCGTTTACCAGCAAA
CTGGAGGGCATGTTCAAGGACATGGAGCTCTCCAAAGACATCATGGTTCACTTCAAGCAGCATATGCAGA
ACCAGAGTGCGCCAGGCCCCATTGACCTCACGGTGAACATACTCACCATGGGCTACTGGCCCACGTACAC
ACCCATGGAAGTGCACCTCCCTCCAGAGATGGTCAGACTTCAGGAAGTATTCAAGACGTTCTACCTGGGC
AAGCACAGTGGGCGGAAGCTGCAATGGCAGACAACGCTGGGACACGCCGTGCTGAAGGCGGACTTTAAGG
AGGGGAAGAAGGAGTTCCAGGTATCCCTCTTCCAGACGCTGGTGCTGCTCATGTTCAACGAAGGGGATGG
ATTTAGCTTTGAAGAAATAAAAATGGCCACTGGCATAGAGGACAGTGAGTTGCGAAGAACACTACAGTCT
CTGGCCTGTGGTAAAGCACGGGTCCTAATTAAAAGTCCCAAAGGAAAGGAGGTGGAAGATGGAGATAAGT
TCATCTTCAATGCAGACTTCAAACACAAGTTGTTCAGAATAAAGATCAATCAAATCCAGATGAAGGAGAC
CGTTGAAGAACAGGTTAGCACTACAGAGAGAGTATTCCAGGATAGACAGTACCAGATCGACGCTGCTATA
GTCAGAATAATGAAAATGAGGAAGACACTTGGTCATAATCTTCTAGTTTCTGAATTATACAATCAGCTGA
AATTTCCAGTGAAGCCTGGAGATTTGAAAAAAAGGATTGAGTCACTTATAGACAGAGACTATATGGAACG
AGACAAAGACAGTCCAAATCAGTACCACTACGTGGCATGA

Translation (759 aa):
MADEGPRKGSVSALMGRTNGLTKPAALAGGPAKPGGTGGSRKLVIKNFRDRPRLPDNYTQDTWRKLHEAV
KAIQSSTSIRYNLEELYQAVENLCSHKVSPTLYKQLRQVCEDHVQAQILPFREDSLDSVLFLKKINTCWQ
DHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRNHIISDRMVQSKTIDGILLLIGRERSGEAVD
RSLLRSLLSMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQDREVPEYLNHVSKRLEEEADRVITYLDH
STQKPLIACVEKQLLGEHLTAILQKGLEHLLDENRVPDLTQMYQLFSRVKGGQHALLQHWSEYIKTFGTT
IVINPEKDKDMVQDLLDFKDKVDHVVEVCFQRNERFINLMKESFETFINKRPNKPAELIAKHVDSKLRAG
NKEATDEELERILDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSK
LEGMFKDMELSKDIMVHFKQHMQNQSAPGPIDLTVNILTMGYWPTYTPMEVHLPPEMVRLQEVFKTFYLG
KHSGRKLQWQTTLGHAVLKADFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQS
LACGKARVLIKSPKGKEVEDGDKFIFNADFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAI
VRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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