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Report for CCDS15647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15647.1 Public Mus musculus 2 Olah 23 108 98 CCDS HistoryNCBI Gene:99035Re-query CCDS DB by CCDS ID:15647.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027955.10 ENSMUSP00000027955.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027955.10Link to Ensembl Protein Viewer:ENSMUSP00000027955.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027955Re-query CCDS DB by Protein ID:ENSMUSP00000027955
Original member Current member EBI ENSMUST00000115087.3 ENSMUSP00000110739.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115087.3Link to Ensembl Protein Viewer:ENSMUSP00000110739.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115087Re-query CCDS DB by Protein ID:ENSMUSP00000110739
Original member Current member EBI ENSMUST00000194918.5 ENSMUSP00000141485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194918.5Link to Ensembl Protein Viewer:ENSMUSP00000141485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194918Re-query CCDS DB by Protein ID:ENSMUSP00000141485
Original member Current member NCBI NM_145921.1 NP_666033.1 Accepted alive Link to Nucleotide Sequence:NM_145921.1Link to Protein Sequence:NP_666033.1Re-query CCDS DB by Nucleotide ID:NM_145921Re-query CCDS DB by Protein ID:NP_666033Link to BLAST:NP_666033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666033.1 265 Q8R197 265 100% 0 0

Chromosomal Locations for CCDS 15647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3342410 3342552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3342919 3343001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3346187 3346356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3346797 3346896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3348241 3348379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3361625 3361755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3365262 3365293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGAGACAGCAGTCTATGCTAAGAGTACCAGGAATGAGAAGGTTTTGAACTGTTTGTGTCAAAAGCCGG
ATGCACTTTTCAAGCTGATCTGCTTTCCCTGGGCAGGAGGCGGCTCCACTCATTTTGCCAAGTGGGGCCG
AAAGATTAATGGCTTATTGGAAGTGCATGCTGTAAGACTGGCTGGGAGAGAAACCCGATTTGAAGAACCT
TTCTCAAATGACATCTACCAGATAGCTGAGGAAGTTGTGACTGCCCTGTTGCCCATCATCCGTGACAAAG
CTTTTGCATTTTTTGGCCACAGTTTCGGATCCTACATTGCTTTTATTACTGCACTGCACCTAAAGGAGAA
ATATAAAATGGAGCCGCTGCATATCTTTGTGTCCAGTGCCTCTGCCCCTCACTCAGAATTCCGGCCTCAA
GTTCCTGATATTAACAAATTGTCAGAAGAACAAATAAGAGATCACCTTCTGATTTTTGGAGGCACTCCCA
AGCATCTCATCGAAGACCAGGATTTTCTGAAGCAATGCATTCCTTTGCTGAAGGCAGATGTTGACATTGT
GAAAAAATTCATCTTTGACAAACCCTCCAAAGCTCTCCTTTCTCGGGACATCACGTGCTTTATTGGATCT
GAAGATGTAGTAAAGGATATAGAAGGCTGGAAAGACATAACCAGTGGGAAGTTTGATGTCCTCAAGCTGC
CAGGTGACCACTTTTATCTGATGGAACCGAACAACGAGGACTTTATCAAGAACTACATAGTCAAGTGTTT
GGAGCTCTCCTCACTTGACTACTTCTAG

Translation (265 aa):
METAVYAKSTRNEKVLNCLCQKPDALFKLICFPWAGGGSTHFAKWGRKINGLLEVHAVRLAGRETRFEEP
FSNDIYQIAEEVVTALLPIIRDKAFAFFGHSFGSYIAFITALHLKEKYKMEPLHIFVSSASAPHSEFRPQ
VPDINKLSEEQIRDHLLIFGGTPKHLIEDQDFLKQCIPLLKADVDIVKKFIFDKPSKALLSRDITCFIGS
EDVVKDIEGWKDITSGKFDVLKLPGDHFYLMEPNNEDFIKNYIVKCLELSSLDYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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