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Report for CCDS1657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1657.1 Public Homo sapiens 2 RNF144A 24 110 108 CCDS HistoryNCBI Gene:9781Re-query CCDS DB by CCDS ID:1657.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1657.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320892.11 ENSP00000321330.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320892.11Link to Ensembl Protein Viewer:ENSP00000321330.6Re-query CCDS DB by Nucleotide ID:ENST00000320892Re-query CCDS DB by Protein ID:ENSP00000321330
Original member Current member NCBI NM_001349182.2 NP_001336111.1 Accepted alive Link to Nucleotide Sequence:NM_001349182.2Link to Protein Sequence:NP_001336111.1Re-query CCDS DB by Nucleotide ID:NM_001349182Re-query CCDS DB by Protein ID:NP_001336111Link to BLAST:NP_001336111.1
Original member Current member NCBI NM_001349183.2 NP_001336112.1 Accepted alive Link to Nucleotide Sequence:NM_001349183.2Link to Protein Sequence:NP_001336112.1Re-query CCDS DB by Nucleotide ID:NM_001349183Re-query CCDS DB by Protein ID:NP_001336112Link to BLAST:NP_001336112.1
Original member Current member NCBI NM_001349184.2 NP_001336113.1 Accepted alive Link to Nucleotide Sequence:NM_001349184.2Link to Protein Sequence:NP_001336113.1Re-query CCDS DB by Nucleotide ID:NM_001349184Re-query CCDS DB by Protein ID:NP_001336113Link to BLAST:NP_001336113.1
Original member Current member NCBI NM_014746.6 NP_055561.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014746.6Link to Protein Sequence:NP_055561.2Re-query CCDS DB by Nucleotide ID:NM_014746Re-query CCDS DB by Protein ID:NP_055561Link to BLAST:NP_055561.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336111.1 292 P50876 292 100% 0 0
NP_001336112.1 292 P50876 292 100% 0 0
NP_001336113.1 292 P50876 292 100% 0 0
NP_055561.2 292 P50876 292 100% 0 0

Chromosomal Locations for CCDS 1657.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 6996927 6997061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 7014454 7014558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 7014712 7014772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 7020473 7020680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 7024369 7024516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 7030126 7030215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 7039629 7039760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGACCACAACAAGGTACCGGCCCACCTGGGACCTGGCCCTCGACCCGCTGGTGTCTTGCAAGCTCTGTC
TTGGGGAGTACCCAGTGGAGCAGATGACAACCATAGCCCAGTGCCAATGCATCTTCTGTACTCTGTGCCT
GAAACAGTATGTTGAGCTCTTGATCAAAGAAGGATTAGAAACCGCAATTAGCTGCCCAGATGCTGCCTGC
CCTAAACAGGGCCACCTACAGGAGAACGAGATTGAGTGCATGGTTGCAGCTGAAATTATGCAAAGATATA
AAAAGCTACAATTTGAAAGAGAGGTGCTGTTTGATCCCTGTCGGACTTGGTGCCCGGCGTCCACCTGCCA
AGCTGTGTGTCAGCTCCAGGACGTGGGGCTGCAGACCCCCCAGCCAGTGCAGTGCAAAGCCTGCCGTATG
GAATTCTGCTCCACCTGCAAAGCCAGCTGGCACCCTGGCCAGGGCTGCCCGGAGACCATGCCGATCACCT
TCCTCCCCGGGGAGACCAGTGCTGCTTTCAAAATGGAAGAAGATGACGCGCCCATCAAGCGCTGCCCCAA
GTGCAAAGTCTACATCGAGCGAGACGAAGGCTGCGCGCAGATGATGTGCAAGAACTGCAAGCACGCCTTC
TGCTGGTACTGCCTGGAGTCTCTGGACGATGATTTCCTTCTGATACACTACGATAAGGGACCCTGCCGGA
ACAAGCTGGGCCACTCCCGGGCATCTGTGATCTGGCATCGGACACAGGTTGTGGGCATTTTTGCAGGATT
TGGGCTGCTGCTCTTGGTGGCCTCACCTTTCCTACTCCTGGCCACTCCCTTTGTACTTTGCTGCAAGTGC
AAGTGCAGTAAAGGTGACGACGACCCGTTACCCACCTAG

Translation (292 aa):
MTTTRYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC
PKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRM
EFCSTCKASWHPGQGCPETMPITFLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAF
CWYCLESLDDDFLLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKC
KCSKGDDDPLPT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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