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Report for CCDS36564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36564.1 Public Mus musculus 12 Amn 23 108 98 CCDS HistoryNCBI Gene:93835Re-query CCDS DB by CCDS ID:36564.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021707.7 ENSMUSP00000021707.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021707.7Link to Ensembl Protein Viewer:ENSMUSP00000021707.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021707Re-query CCDS DB by Protein ID:ENSMUSP00000021707
Original member Current member NCBI NM_033603.3 NP_291081.2 Accepted alive Link to Nucleotide Sequence:NM_033603.3Link to Protein Sequence:NP_291081.2Re-query CCDS DB by Nucleotide ID:NM_033603Re-query CCDS DB by Protein ID:NP_291081Link to BLAST:NP_291081.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291081.2 458 Q99JB7 458 100% 0 0

Chromosomal Locations for CCDS 36564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111271122 111271164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111271697 111271815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111271898 111271942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111274143 111274230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111274359 111274576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111274711 111274848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111274954 111275062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111275157 111275239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111275345 111275492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111275572 111275749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111275833 111275926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111276016 111276129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGGTGCTCTGGGCCGGGTCCTGCTGTGGCTGCAGCTCTGTGCAATGACTCGGGCCGCCTACAAACTTT
GGGTCCCCAATACCTCCTTCGATACTGCCTCCAACTGGAACCAGAACCGGACCCCGTGCGCGGGAGATGC
GGTTCAGTTCCCGGCGGACAAGATGGTGTCGGTCCTGGTACGAGACAGTCACGCCATCTCGGATATGCTC
CTGCCTCTGGACGGGGAGTTGGTCCTGGCCTCGGGAGCTGCACTCAGCGCTGCAGGAGGCGACTCGGACC
CAGCTTGTAACCCTGGCGCCCCGTTGCTCTTCCGCAATCCCGATCGCTTCTCCTGGCTTGACCCGCACCT
CTGGAGCTCCGGGACTCAGGCGCCCGGGCTCTTCTCCGTGGACGCCGAGCGCGTGCCCTGCAGCTACGAC
GACGTCCTCTTCCCGCGCGATGGATCTTTCCGCGTGGCGCTTGGCCCAGGCCCCAACCCGGTGCACGTTC
GCAGCGTCTCGGCAGTGGGCCAGACGTTCTCGCGCGACGAGGACCTGACTGCTTTCCTGGCGTCCCGCGA
GGGCCGCCTGCGCTTCCACGGGTCGGGCGCGCTGAGAGTGGGGTCCCAAGCTTGCACCGACGCGTCGGGC
TGCGTCTGTGGCAACGCCGAGATGCTGCCGTGGATCTGCGCGTCTCTGCTGCAGCCCTTGGGCGGCCGCT
GTCCCCAGGCCGCCTGCCAGGACCCCCTACTGCCTCAAGGACAATGCTGTGACCTCTGCGGAGCTATCGT
GTCGTTGACCCACGACCCCACATTTGACCTGGAGCGGTACCGAGCGCGGCTGCTGGACCTCTTCCTGAAG
CAGCCCCAGTACCAGGGCCTGCAGGTGGCTGTGTCCAAGGTGCTGCGCGACGCCCACACCGAGATCCAGG
TGGTGCTGGTGGAGACCGAGCACGCGACCGGCGCGGCGGGGCAGCTGGGCCACGCGCTCCTCCAGGACGC
GGTGGCACAAGGCAGCGTGCTCGGTATCGTGTCGGCGACCCTGCGGCAGTCCGGCAAGCCTATGACGGCA
GACTCAGAGCTGAATCAGAGCTCGTCCGGTGCCGGGCTGGCGGGCGGCGTGGCGGCCTTGGTGCTGCTGG
CTCTGCTGGGGACCGTGCTCCTTCTGCTGCACCGCAGCGGAAGGCTCAGGTGGAGAAGGCATGAAGACGC
TGAGCCCGTATCGGCTGGGCTGCCGCTGGGTTTCCGAAATCCGATTTTCGACGCGATTGTCTTCAAGCAG
CAGCCTTCGGTCGAGCTACCTGACTCAGCTCAGAAGGTGGACATCTTGGACATTGATACCAAGTTCGGCT
GCTTCGTTAACCCACTCTTTGCTGGGGAGGCAGAGGCAGAGGCCTGA

Translation (458 aa):
MGALGRVLLWLQLCAMTRAAYKLWVPNTSFDTASNWNQNRTPCAGDAVQFPADKMVSVLVRDSHAISDML
LPLDGELVLASGAALSAAGGDSDPACNPGAPLLFRNPDRFSWLDPHLWSSGTQAPGLFSVDAERVPCSYD
DVLFPRDGSFRVALGPGPNPVHVRSVSAVGQTFSRDEDLTAFLASREGRLRFHGSGALRVGSQACTDASG
CVCGNAEMLPWICASLLQPLGGRCPQAACQDPLLPQGQCCDLCGAIVSLTHDPTFDLERYRARLLDLFLK
QPQYQGLQVAVSKVLRDAHTEIQVVLVETEHATGAAGQLGHALLQDAVAQGSVLGIVSATLRQSGKPMTA
DSELNQSSSGAGLAGGVAALVLLALLGTVLLLLHRSGRLRWRRHEDAEPVSAGLPLGFRNPIFDAIVFKQ
QPSVELPDSAQKVDILDIDTKFGCFVNPLFAGEAEAEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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