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Report for CCDS33023.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33023.2 Public Homo sapiens 19 TIMM50 24 110 108 CCDS HistoryNCBI Gene:92609Re-query CCDS DB by CCDS ID:33023.2See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 33023.1
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33023.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000607714.6 ENSP00000475531.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000607714.6Link to Ensembl Protein Viewer:ENSP00000475531.1Re-query CCDS DB by Nucleotide ID:ENST00000607714Re-query CCDS DB by Protein ID:ENSP00000475531
Original member Current member NCBI NM_001001563.5 NP_001001563.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001563.5Link to Protein Sequence:NP_001001563.2Re-query CCDS DB by Nucleotide ID:NM_001001563Re-query CCDS DB by Protein ID:NP_001001563Link to BLAST:NP_001001563.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001563.2 353 Q3ZCQ8-1 353 100% 0 0

Chromosomal Locations for CCDS 33023.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39480854 39480961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39481883 39482033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39482885 39482916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39483135 39483156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39485544 39485602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39485688 39485807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39486187 39486291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39486397 39486495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39488061 39488217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39488539 39488645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39489719 39489820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGCGGCCTCGGCAGCGGTGTTCTCGCGCTTGCGAAGCGGGCTCCGGCTCGGCTCGCGGGGACTGTGCA
CGAGGTTGGCGACGCCGCCCCGCCGGGCCCCAGATCAGGCCGCAGAGATCGGGAGCCGCGGGAGCACTAA
GGCGCAAGGGCCACAGCAGCAGCCGGGCTCAGAGGGTCCCAGCTATGCCAAAAAAGTTGCGCTCTGGCTT
GCTGGGCTGCTTGGAGCTGGTGGGACTGTGAGCGTCGTCTATATCTTTGGAAACAACCCGGTGGACGAAA
ATGGTGCCAAGATTCCTGATGAGTTCGACAATGATCCAATTCTGGTACAGCAGTTGCGCCGGACATACAA
ATATTTCAAAGATTATAGACAGATGATCATCGAGCCCACCAGCCCTTGCCTTCTCCCAGACCCTCTGCAG
GAACCGTACTACCAGCCACCCTACACGCTCGTTTTGGAGCTCACCGGCGTCCTCTTGCATCCTGAGTGGT
CGCTGGCCACTGGCTGGAGGTTTAAGAAGCGCCCAGGCATCGAGACCTTGTTCCAGCAGCTTGCCCCTTT
ATATGAAATTGTCATCTTTACGTCAGAGACTGGCATGACTGCGTTTCCACTCATTGATAGTGTGGACCCC
CATGGCTTCATCTCCTACCGCCTATTCCGGGACGCCACAAGATACATGGATGGACACCATGTAAAGGATA
TTTCATGTCTGAATCGGGACCCAGCTCGAGTAGTAGTTGTGGACTGCAAGAAGGAAGCCTTCCGCCTGCA
GCCCTATAACGGCGTTGCCCTGCGGCCCTGGGACGGCAACTCTGATGACCGGGTCTTGTTGGATCTGTCT
GCCTTCCTCAAGACCATTGCACTGAATGGTGTGGAGGACGTGCGAACCGTGCTGGAGCACTATGCCCTGG
AGGATGACCCGCTGGCGGCTTTCAAACAGCGGCAAAGCCGGCTAGAGCAGGAGGAGCAGCAGCGCCTGGC
CGAGCTCTCCAAGTCCAACAAGCAGAACCTCTTCCTTGGCTCCCTCACCAGCCGCTTGTGGCCTCGCTCC
AAACAGCCCTGA

Translation (353 aa):
MAASAAVFSRLRSGLRLGSRGLCTRLATPPRRAPDQAAEIGSRGSTKAQGPQQQPGSEGPSYAKKVALWL
AGLLGAGGTVSVVYIFGNNPVDENGAKIPDEFDNDPILVQQLRRTYKYFKDYRQMIIEPTSPCLLPDPLQ
EPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP
HGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLS
AFLKTIALNGVEDVRTVLEHYALEDDPLAAFKQRQSRLEQEEQQRLAELSKSNKQNLFLGSLTSRLWPRS
KQP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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