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Report for CCDS23422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23422.1 Public Mus musculus 9 Trim42 23 108 98 CCDS HistoryNCBI Gene:78911Re-query CCDS DB by CCDS ID:23422.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035026.4 ENSMUSP00000035026.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035026.4Link to Ensembl Protein Viewer:ENSMUSP00000035026.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035026Re-query CCDS DB by Protein ID:ENSMUSP00000035026
Original member Current member NCBI NM_030219.2 NP_084495.2 Accepted alive Link to Nucleotide Sequence:NM_030219.2Link to Protein Sequence:NP_084495.2Re-query CCDS DB by Nucleotide ID:NM_030219Re-query CCDS DB by Protein ID:NP_084495Link to BLAST:NP_084495.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084495.2 723 Q9D2H5 723 100% 0 0

Chromosomal Locations for CCDS 23422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97349739 97349825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97359093 97359317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97362886 97363706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97365603 97366300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97369504 97369844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGGAGACGGCTATGTGTGTCTGTTCTCCCTGCTGTACCTGGCAGAGATGCTGCCCCCGGCTGTTCTCCT
GCCTGTGCTGCAAGTTCATCTTCACCTCCGAGCGGAACTGCACCTGCTTCCCCTGCCCCTACAAGGATGA
GCGGAACTGCCAGTTCTGCCACTGCACCTGTGCAGAGAACCCCAATTGCCACTGGTGCTGCTGCTCCTGG
GCCAATGACCCCAACTGTAAGTGCTGCTGCACGGCCAGCACCAATCTGAAGTGCTACTACTACGAGAGCC
ACTGCTGCCGCAATGTTACCATCACATTCAGAAAGGGTCGCCTTCGAAGCATCGTCACCTCCTCTAAGAC
CGCCCTCCGCGTGGGGAGCAGCGATACTCAGATGGATGAACCCAAGACCATGCCTGCCAGCAGCCACCTG
GTGAGCCACCTCACCTGCCCCATGTGCAACCGGCTGCGCCTGCACTCCTTCATGCTGCCCTGCAACCACA
GCCTATGCGAGAAGTGCCTGCGGCAGCTGCAAAAGCACGCCGAGGTCACGGAGAATTTCTTCATCCTCAT
CTGCCCCATGTGCAGCCGCTCGCACTGTATGCCCTACAGCCACCAGATGCACCTGCCAGAAAACTACCTG
CGCGGGCGCCTTACTAAACGCTACATGCAGCAGCACGGCTACCTCAAGTGGCGCTTCGACCGCTCCTCAG
GGCCCATCCTCTGCCAGGTGTGCCGCACCCGGCGCATTGCCTACAAGCGCTGTGTCACCTGTCGTCTCAA
CCTGTGCAACGACTGTCTCAAGGCCTTCCACTCAGACGTGGCCATGCAGGACCACGTCTTCGTGGACACC
AGCGCTGAGGACCAGGATGAGAAGATTTGCATCCACCATCCATCCAGCCGCATCAACGAGTACTGCCGCA
GCGACAACCAGCTACTCTGCGCTTTCTGCAAGATCGCTTTCCACAATGGCCATGACACGGTCAGCCTCAT
AGACGCCTGCTCCGAGAGGTCTGCTGCCCTCTTCAGTGCCATCGCCAAGTTCAAAGCAGTCCGATATGAA
ATTGATAATGACCTGATGGAATTCAACATTCTAAAGAGCAGTTTTAAAGCTGACAAGGAAGCAAAGAGGA
AGGAGGTCCGGAATGGTTTCCTCAAACTGCGAGCCATCCTTCAAGAGAAAGAAAAGATCATCATGGAACA
GATAGAGAATCTGGAAGTGTCCAGGCAGAAAGAAATTGAGAAATATGTGTACATTACGACCATGAAAGTG
AACGAAATGGATGGCCTGATTGCTTACTCCAAAGAAGCCCTGAAGGAAACAGGACAGGTGGCCTTCCTGC
AGTCTGCCAAGATCCTGGTAGACCAGATTGAGGAGGGCATCCAGAATACCTTCAGGCCCGACCCTCAGCT
GCGGCTTCACTCCCTACACTGTATCCCCTTGGATTTTGCTGAACTCTCCAATGCCATCCACGAGCTCTTT
CCCACGGGACCCAAAAAGGCTTGCTCCTCTGGGGACTCACTCCCTTCCCAGTATCCTATCCACTCAGAAA
TGATGATCGCCAGGAAGGTGACATTCAGCACCCATAGCTTCGGCAACCAGCAGATATACCAGCGGAGCTC
TTCCTTGATATCCTTCAACACCGCCAATGACAAGGGCAAGATGGGTCTGGAGAACTACGGGAGAGCCCAG
TCTGCCGCGCCCGCCAAGACGACTGACGGCCTTTACACCTACTGGAGTGCCACAGGGGAAACCCAGCCCC
CGCAGAGCAGTAACAGCTTCCACAACTGGTATTCCTTCAACGACACCTCTGTGAGGACCCCAGGCCCAAT
TGTCATCTACCAGACACTGGTGTACCCAAGAGCTGCCAAGGTTTACTGGACGTGCCCAACAGAAGACGTG
GACTCCTTTGAGATGGAATTCTATGAGCTCGTTACCACCCCTCCTAATAATGTGCGCACAGAGCTCTGTG
GACAAATTCGCGACATCCTGCAGCAGAACCTGGAGCTACACAACCTGACCCCCAACACTGAGTATTTGTT
CAAGGTTAGAGCCATCAATGATAATGGTCCCGGGCAGTGGAGTGACATCTGCAAGGTGGTAACACCAGAT
GGGCGTGGGAAGAACCGGGCTAAGTGGGGACTCCTGAAGAACATCCAGTCTGCCCTCCAGAAGCGCTTCT
GA

Translation (723 aa):
METAMCVCSPCCTWQRCCPRLFSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCAENPNCHWCCCSW
ANDPNCKCCCTASTNLKCYYYESHCCRNVTITFRKGRLRSIVTSSKTALRVGSSDTQMDEPKTMPASSHL
VSHLTCPMCNRLRLHSFMLPCNHSLCEKCLRQLQKHAEVTENFFILICPMCSRSHCMPYSHQMHLPENYL
RGRLTKRYMQQHGYLKWRFDRSSGPILCQVCRTRRIAYKRCVTCRLNLCNDCLKAFHSDVAMQDHVFVDT
SAEDQDEKICIHHPSSRINEYCRSDNQLLCAFCKIAFHNGHDTVSLIDACSERSAALFSAIAKFKAVRYE
IDNDLMEFNILKSSFKADKEAKRKEVRNGFLKLRAILQEKEKIIMEQIENLEVSRQKEIEKYVYITTMKV
NEMDGLIAYSKEALKETGQVAFLQSAKILVDQIEEGIQNTFRPDPQLRLHSLHCIPLDFAELSNAIHELF
PTGPKKACSSGDSLPSQYPIHSEMMIARKVTFSTHSFGNQQIYQRSSSLISFNTANDKGKMGLENYGRAQ
SAAPAKTTDGLYTYWSATGETQPPQSSNSFHNWYSFNDTSVRTPGPIVIYQTLVYPRAAKVYWTCPTEDV
DSFEMEFYELVTTPPNNVRTELCGQIRDILQQNLELHNLTPNTEYLFKVRAINDNGPGQWSDICKVVTPD
GRGKNRAKWGLLKNIQSALQKRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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