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Report for CCDS50419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50419.1 Public Mus musculus 19 Lipm 23 108 98 CCDS HistoryNCBI Gene:78753Re-query CCDS DB by CCDS ID:50419.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025685.7 ENSMUSP00000025685.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025685.7Link to Ensembl Protein Viewer:ENSMUSP00000025685.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025685Re-query CCDS DB by Protein ID:ENSMUSP00000025685
Original member Current member NCBI NM_023903.1 NP_076392.1 Accepted alive Link to Nucleotide Sequence:NM_023903.1Link to Protein Sequence:NP_076392.1Re-query CCDS DB by Nucleotide ID:NM_023903Re-query CCDS DB by Protein ID:NP_076392Link to BLAST:NP_076392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076392.1 422 Q8K2A6 422 100% 0 0

Chromosomal Locations for CCDS 50419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34101170 34101316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34109557 34109674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34111909 34112107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34112885 34112994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34116126 34116262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34116396 34116542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34117865 34117936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34118716 34118787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34121130 34121396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGTCAGAAATCTTGTCAAGAGTGTGGACTGTTTCGCACAGAGTGGAGATATGGCTTCTGATTCTGGTAG
CGTATTTACTCCAAAGAAATGTGAACTCGGGACATTTGCCCACGAAAGCTGCGGATCCAGAAGCATTCAT
GAATGTTAGCGAAATCATCAAACACAAGGGTTATCCCAGTGAGGAGTATGAAGTTGCAACGGAAGATGGG
TACATCCTTTCTGTGAACAGAATCCCTCGGGGACAGACACGGTTAAAGAAGGAAGGATCCAGGCCAGTGG
TGTTACTGCAACATGGTCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCTGCCCAACAACAGCCTGGG
TTTTATTCTGGCAGATGCAGGTTTTGATGTGTGGATGGGAAACAGCAGAGGAAACACCTGGTCTCGGAAG
CACAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCTTTCAGTTATGATGAAATGGCTAGGTTTGACC
TTCCAGCTGTGATAAACTTTATCTTACAGAAAACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACA
GGGCACCACCATGGGCTTTATTGCATTTTCCACAATGCCAGAGCTAGCTCATAAAATCAAAATGTATTTT
GCCTTAGCTCCTATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCCAGATA
TGATGATCAAGGTATTATTTGGCAGACAAGAGTTTTTATACCAGACTAGATTTTTCAGACAGCTTTTTAT
TTACCTTTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAAC
ACAAACAATATGAACATGAGCAGAGCAAATGTGTATGTCGCCCATACACCTGCTGGAACGTCTGTGCAGA
ACATTCTCCACTGGAGCCAGGCCGTGAATTCTGGGGAACTTCGTGCCTTTGACTGGGGAAGTGAGACCAA
AAATCAGGAGAAATGTAATCAGCCAACTCCTATAAGGTACAAAGTTCGAGATATGATGGTCCCAACAGCA
ATGTGGACTGGAGGTCAAGACTGGCTTTCAAATCCAGATGATGTGAAAACATTACTTTCTGAAGTAACCA
ACCTCATCTACCACAAGAACATTCCTGAGTGGGCTCATGTGGATTTCATCTGGGGGCTGGATGCCCCTCA
GCGTGTTTACAATGAAATTATACATCTGATGAAGCAGGAGCCCAACCTTCCCCAGGGAACCTGCAGGGTC
AAATTGTGA

Translation (422 aa):
MSEILSRVWTVSHRVEIWLLILVAYLLQRNVNSGHLPTKAADPEAFMNVSEIIKHKGYPSEEYEVATEDG
YILSVNRIPRGQTRLKKEGSRPVVLLQHGLLGDASNWISNLPNNSLGFILADAGFDVWMGNSRGNTWSRK
HKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQKKVYYVGYSQGTTMGFIAFSTMPELAHKIKMYF
ALAPIATVKYARSPGTKFLLLPDMMIKVLFGRQEFLYQTRFFRQLFIYLCGQMILDQICSNIILLLGGFN
TNNMNMSRANVYVAHTPAGTSVQNILHWSQAVNSGELRAFDWGSETKNQEKCNQPTPIRYKVRDMMVPTA
MWTGGQDWLSNPDDVKTLLSEVTNLIYHKNIPEWAHVDFIWGLDAPQRVYNEIIHLMKQEPNLPQGTCRV
KL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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