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Report for CCDS40949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40949.1 Public Mus musculus X 6030498E09Rik 23 108 98 CCDS HistoryNCBI Gene:77883Re-query CCDS DB by CCDS ID:40949.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050744.5 ENSMUSP00000061776.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050744.5Link to Ensembl Protein Viewer:ENSMUSP00000061776.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050744Re-query CCDS DB by Protein ID:ENSMUSP00000061776
Original member Current member EBI ENSMUST00000168144.2 ENSMUSP00000132324.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168144.2Link to Ensembl Protein Viewer:ENSMUSP00000132324.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000168144Re-query CCDS DB by Protein ID:ENSMUSP00000132324
Original member Current member NCBI NM_183126.2 NP_898949.2 Accepted alive Link to Nucleotide Sequence:NM_183126.2Link to Protein Sequence:NP_898949.2Re-query CCDS DB by Nucleotide ID:NM_183126Re-query CCDS DB by Protein ID:NP_898949Link to BLAST:NP_898949.2

Chromosomal Locations for CCDS 40949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38958084 38958474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38959437 38959555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGAGATCCCGCTTCTATACATCTAATGGCTCGGGTCGGTTTCCCCAGAGGCGAAGAGTGAGGGCTGTTT
CCCAGAAGAGCAATGTCCCTGGCCTCTGTCTGTATACTATTCTGTGCTTTGGCTTGGGCCTGGGCCTGGG
CCTGATCTTGGGCTTGGGCTTGGGCTTGGGCTTGGGCCTGGGTTTAAACTCAGGGTTTGGTTTAAGCCTT
GGACTGGGTCTGGGTACGGGCTTGAGCATCAGATTAGGCAGGAACCTTGACATGCCCCAGATGGCCTCCT
TGGATGCTGTGCACCAGGTGTCAACTGACAATGTTGCCATTGAGGATGATTCTGTGGGATCTATCATGAA
AGAAATGGATGAGAACATCGGGCAGATCTCAGATATAAGGGCAATCAGTAAATATGAGTGTGACAATTGG
GAGGATATACATGAAATTGCTGCAGATGAGATAGTGAAAGAAGGAGCAGAAGAAGGTGGGCAAGATAATC
ATCAGACCAAAGCAACCTGA

Translation (169 aa):
MRSRFYTSNGSGRFPQRRRVRAVSQKSNVPGLCLYTILCFGLGLGLGLILGLGLGLGLGLGLNSGFGLSL
GLGLGTGLSIRLGRNLDMPQMASLDAVHQVSTDNVAIEDDSVGSIMKEMDENIGQISDIRAISKYECDNW
EDIHEIAADEIVKEGAEEGGQDNHQTKAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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