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Report for CCDS50104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50104.1 Public Mus musculus 17 2410137M14Rik 23 108 98 CCDS HistoryNCBI Gene:76797Re-query CCDS DB by CCDS ID:50104.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039846.11 ENSMUSP00000044846.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039846.11Link to Ensembl Protein Viewer:ENSMUSP00000044846.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039846Re-query CCDS DB by Protein ID:ENSMUSP00000044846
Original member Current member NCBI NM_029747.3 NP_084023.1 Accepted alive Link to Nucleotide Sequence:NM_029747.3Link to Protein Sequence:NP_084023.1Re-query CCDS DB by Nucleotide ID:NM_029747Re-query CCDS DB by Protein ID:NP_084023Link to BLAST:NP_084023.1

Chromosomal Locations for CCDS 50104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36977982 36978106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36978469 36978546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36978651 36978933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36981140 36981142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGACTCCCCCCAAAACAAATGTGGCCCATCATTCAACGCTTGAAGGTGATGTCACCCTGAGATGCTGGG
CCCTGGATTTCCACCCTGCTGTCATCATCCTGACCTGGCAGAGGGATGAGAAGGACCTGACTCAGGACAT
GGACCTTGTGGAGACCAGGCCTGCAGAGGACGAAGCCTTCCAGAAGTGGGCAGCTGTGGTGCTGCCTTCA
GGAGAAGAGCATAAATACACATGCCATGTGCAACCTGAGGGGCTGTCTGAACCTCTCATCCTGAAATGGA
GTAAAGAGCCATCTTTTTCTCCCACCACACCCATCACGGGGATCACTGCTGGTCTGGTTCTCCTTCCAGT
TTTGGTCACTGGAGGTCTGTCTGCAACCATACCCCTGGAATATTGCCTGAGGTCTAGGACTAAGAGTTTC
CTCTGGAACCAAATCGTTCTGCATTCTGTTCTCTGCCTTTATCCTCCCAGAGATGGAGAAGGATGTTAA

Translation (162 aa):
MTPPKTNVAHHSTLEGDVTLRCWALDFHPAVIILTWQRDEKDLTQDMDLVETRPAEDEAFQKWAAVVLPS
GEEHKYTCHVQPEGLSEPLILKWSKEPSFSPTTPITGITAGLVLLPVLVTGGLSATIPLEYCLRSRTKSF
LWNQIVLHSVLCLYPPRDGEGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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