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Report for CCDS17283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17283.1 Public Mus musculus 3 Actrt3 23 108 98 CCDS HistoryNCBI Gene:76652Re-query CCDS DB by CCDS ID:17283.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047630.6 ENSMUSP00000048360.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047630.6Link to Ensembl Protein Viewer:ENSMUSP00000048360.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047630Re-query CCDS DB by Protein ID:ENSMUSP00000048360
Original member NCBI NM_029690.2 NP_083966.1 Updated not alive Link to Nucleotide Sequence:NM_029690.2Link to Protein Sequence:NP_083966.1Re-query CCDS DB by Nucleotide ID:NM_029690Re-query CCDS DB by Protein ID:NP_083966
Current member NCBI NM_029690.3 NP_083966.1 Accepted alive Link to Nucleotide Sequence:NM_029690.3Link to Protein Sequence:NP_083966.1Re-query CCDS DB by Nucleotide ID:NM_029690Re-query CCDS DB by Protein ID:NP_083966Link to BLAST:NP_083966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083966.1 369 Q8BXF8 369 100% 0 0

Chromosomal Locations for CCDS 17283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 30597834 30598749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30599656 30599849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGAGCGGCTACCAGCCACCAGTGGTGATCGACAACGGCTCGGGAATGATCAAGGCGGGCCTGGCTGGGA
CCCGGGAGCCCCAGTTTGTCTACCCGAATATTCTGGGCCGGTCCAAGGGCCATACGGCGGACAGCAGGCA
GGAGCTGTGTGTGGGTGATCAAGCGCAGGAGCGCAGGAGCTTCCTATCCATCAGCTATCCAGTGGAACGG
GGTCTCATTTCCTCCTGGGGGGACATGGAGATCATGTGGAAGCATATCTATGACTACAACCTGAACCTGA
ACGCCAGTGATGGCCCGGTCTTGGTTACAGAACCTGCGCTGAATCCACTGGCAGACCGGCAACACATCTC
CGAAGTGTTTTTTGAGAATCTGGGAGTCCCTGCCTTCTACATGTCCGCCCAGGCGGTGTTGGCTCTCTTC
GCTGCTGGCTTTACTACTGGCCTGGTGCTGAATTCAGGAGCTGGGATTACTCAGTGTGTGCCCATCTTTG
AGGGTTACTGCCTATCTCATGGTGTAAAACAGCTAAATGTGGCAGGATCTGACCTCACCAGCTACCTCAT
GATGTTGTTGAAGGGTGATGGTATCATGCTGCTTAGAACCGGGGACAGGAAGGTTGTTACAGACATTAAA
GAGAATGCTTGTTATGTGGCGATGAACTATGAAGATGAAATGACCAAGGACTCTAACCTAGAGAAAATAT
ACACCCTGCCTGATGGAAAGACTGTCAAACTCCATAAGCAGTTATTTCATTGCCCAGAGGCCCTCTTTTC
TCCATATCTTGTGAATGTTGATGCTCCGGGCATCGACAAGATGTGCTTCGGCAGCATAATGAAATGTGAT
ACAGATCTCAGGAACTCCTTCTTCTCCAATATCATCCTTTCGGGAGGATCAACGTCTTTTCCTGGTTTAG
ATAAGCGACTCATTAAGGATGTGGCAAAGCTGGCACCTGCCAATACTGCCGTACAGGTTATAGCTCCCCC
GGAAAGGAAAATATCAGTGTGGATGGGGGGTTCTATTCTTGCCTCCTTGTCTGCCTTCCAAGACATGTGG
ATCACGGCTGCAGAATTTGAAGAAGTTGGACCCAACATTGTACACCAGAGATGCTTTTGA

Translation (369 aa):
MSGYQPPVVIDNGSGMIKAGLAGTREPQFVYPNILGRSKGHTADSRQELCVGDQAQERRSFLSISYPVER
GLISSWGDMEIMWKHIYDYNLNLNASDGPVLVTEPALNPLADRQHISEVFFENLGVPAFYMSAQAVLALF
AAGFTTGLVLNSGAGITQCVPIFEGYCLSHGVKQLNVAGSDLTSYLMMLLKGDGIMLLRTGDRKVVTDIK
ENACYVAMNYEDEMTKDSNLEKIYTLPDGKTVKLHKQLFHCPEALFSPYLVNVDAPGIDKMCFGSIMKCD
TDLRNSFFSNIILSGGSTSFPGLDKRLIKDVAKLAPANTAVQVIAPPERKISVWMGGSILASLSAFQDMW
ITAAEFEEVGPNIVHQRCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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