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Report for CCDS29063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29063.1 Public Mus musculus 18 Rmc1 23 108 98 CCDS HistoryNCBI Gene:76482Re-query CCDS DB by CCDS ID:29063.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025276.14 ENSMUSP00000025276.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025276.14Link to Ensembl Protein Viewer:ENSMUSP00000025276.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025276Re-query CCDS DB by Protein ID:ENSMUSP00000025276
Original member Current member NCBI NM_029623.2 NP_083899.1 Accepted alive Link to Nucleotide Sequence:NM_029623.2Link to Protein Sequence:NP_083899.1Re-query CCDS DB by Nucleotide ID:NM_029623Re-query CCDS DB by Protein ID:NP_083899Link to BLAST:NP_083899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083899.1 657 Q8VC42 657 100% 0 0

Chromosomal Locations for CCDS 29063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12168801 12168902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12169233 12169309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12171549 12171633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12176137 12176193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12178188 12178274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12179113 12179253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12179489 12179592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12180485 12180574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12180666 12180771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12181584 12181695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12183979 12184023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12184209 12184262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12184892 12185020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12185649 12185755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12188209 12188328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12188560 12188637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12188820 12188924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12189013 12189081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12189160 12189385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12189806 12189885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGGCGGCGAGGACTACTACCTGGAGCTGTGCGAGCGGCCGGTGCAGTTCGAGAAGGCGAACCCGGTTA
ACTGCGTGTTCTTCGATGAGGCCAACAAGCAGGTTTTTGCTGTTCGGTCGGGTGGAGCTACAGGAGTGGT
CGTTAAAGGCCCAGATGATAGGAATCCCATCTCTTTTAGGATGGACGACAGAGGAGAGGTGAAGTGCATC
AAGTTTTCTTTAGAAAACAAGATCCTGGCTGTGCAGAGGACTGCGAAGGCTGTGGACTTTTGTAATTTTA
TTCCAGATAACTCTCAACTGGAGTACACACAAGAGTGCAAGACCAAGAATGCCAACATACTCGGATTCTG
CTGGACCAGCTCTACTGAGATCGTCTTCATAACTGACCAAGGCATCGAATTTTACCAGGTGATGCCTGAG
AAACGAAGTCTCAAACTCCTGAAGAGTCACAACATCAATGTGAACTGGTACACGTATTGCCCCGAGAGCG
CCGTGATCCTGCTGTCCACCACAGTCCTTGAGAATGTCCTGCAGCCTTTCCATTTTAGGGCTGGCACCAT
GTCGAAGCTTCCCAAGTTCGAGATTGAGTTACCAGCTGCACCGAAGTCAACTAAACTTAGCCTTTCAGAA
CGAGACATTGCGATGGCGACCATATACGGGCAGCTTTACATCCTCTTCCTGCGCCATCACTCTCGGACGT
CTAACAGCACGGGAGCGGAGGTGGTGCTGTACCATCTCCCACGAGAGGGTGCATGTAAAAAGATGCACAT
ACTGAAGTTAAATAGGACGGGAAAGTTTGCCCTAAATGTAGTGGACAACCTGGTCGTTGTCCACCATCAG
GACACAGAGACGTCAGTGATATTTGACATCAGGCTACGGGGCGAGTTCGATGGCACGGTTACCTTCCACC
ATCCTGTGCTTCCAGCCCGATCAATTCAACCTTACGAGATCCCCCTGGCAGGTCCTGCAGCCGTGACCAG
CCAGTCTCCTGTCCCCTGTAAACTCTATTCCTCTTCATGGATCGTCTTTCAACCAGACATCATTATCAGT
GCAAGCCAAGGTTACCTCTGGAACCTGCAGGTGAAACTTCAGCCCATAGTGAATCTCTTGCCAGATAAAG
GAAGGCTGATGGACTTTCTCCTCCAGAGGAAGGAGTGCAAGGCGGTGGTTCTGTCTGTGTGTTCACAGAT
GCTGAGTGAGTCAGACAGAGCCACGCTGCCTGTGATAGCCACCGTGTTTGATAAACTCAACCATGAGTAT
AAGAAGTACTTGGATGCTGATCAGAGCTACACAATGGCAGTAGAAGCAGGGCAGAGCCGGAGCAACCCAC
CTCTCAAAAGGCCAGTGCGAACCCAAGCAGTGGTAGACCAGTCTGATGTGTACACACAGGTGCTGTCACC
ATTCGTGGAAAACAAGGAGATGCCGCACAAGTTTGTGATAGCTGTGCTGATGGAATATATTCGTTCTCTG
AACCAGTTTCAGATTCCAGTGCAGCACTACTTACATGAACTTGTCATCAAGACACTGGTCCAGCATAACC
TCTTCTACATGCTGCACCAGTTCCTGCAGTACCACGTGCTCAGCGACTCCAAGCCTTTGGCTTGCTTGCT
GCTGTCCCTAGAGAGCTTTTATCCTCCCGCCCACCAGCTATCTCTGGACATGTTGAAGAGACTTTCAACA
GCAAATGATGAGATAGTAGAAGTTCTTCTGTCTAAACACCAGGTGTTGGCTGCCCTGAGGTTCATCCGGG
GCATTGGTGGCCATGACAACATTTCTGCTCGCAAATTCTTAGATGCTGCGAGGCAGACCGACGATGTCAT
GCTCTTCTATACCATATTCCGCTTCTTTGAACAGCGGAACCAGCGCCTGCGAGGGAACCCTAACTTCACA
CCAGGAGAGCACTGTGAAGAACACGTTGCCTTTTTCAAGCAGGTTTTTGGAGAACAAGCTCTAATGAGGC
CTACAACATTCTGA

Translation (657 aa):
MGGEDYYLELCERPVQFEKANPVNCVFFDEANKQVFAVRSGGATGVVVKGPDDRNPISFRMDDRGEVKCI
KFSLENKILAVQRTAKAVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIVFITDQGIEFYQVMPE
KRSLKLLKSHNINVNWYTYCPESAVILLSTTVLENVLQPFHFRAGTMSKLPKFEIELPAAPKSTKLSLSE
RDIAMATIYGQLYILFLRHHSRTSNSTGAEVVLYHLPREGACKKMHILKLNRTGKFALNVVDNLVVVHHQ
DTETSVIFDIRLRGEFDGTVTFHHPVLPARSIQPYEIPLAGPAAVTSQSPVPCKLYSSSWIVFQPDIIIS
ASQGYLWNLQVKLQPIVNLLPDKGRLMDFLLQRKECKAVVLSVCSQMLSESDRATLPVIATVFDKLNHEY
KKYLDADQSYTMAVEAGQSRSNPPLKRPVRTQAVVDQSDVYTQVLSPFVENKEMPHKFVIAVLMEYIRSL
NQFQIPVQHYLHELVIKTLVQHNLFYMLHQFLQYHVLSDSKPLACLLLSLESFYPPAHQLSLDMLKRLST
ANDEIVEVLLSKHQVLAALRFIRGIGGHDNISARKFLDAARQTDDVMLFYTIFRFFEQRNQRLRGNPNFT
PGEHCEEHVAFFKQVFGEQALMRPTTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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