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Report for CCDS48962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48962.1 Public Mus musculus 11 Prr29 23 108 98 CCDS HistoryNCBI Gene:75573Re-query CCDS DB by CCDS ID:48962.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106816.7 ENSMUSP00000102429.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106816.7Link to Ensembl Protein Viewer:ENSMUSP00000102429.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106816Re-query CCDS DB by Protein ID:ENSMUSP00000102429
Original member Current member NCBI NM_029345.1 NP_083621.1 Accepted alive Link to Nucleotide Sequence:NM_029345.1Link to Protein Sequence:NP_083621.1Re-query CCDS DB by Nucleotide ID:NM_029345Re-query CCDS DB by Protein ID:NP_083621Link to BLAST:NP_083621.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083621.1 187 B1ARI9-1 187 100% 0 0

Chromosomal Locations for CCDS 48962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106374858 106374917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106375173 106375248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106375409 106375515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106376254 106376474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106376627 106376697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106376893 106376921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGGCCTCCCTCGGGAGTGGGAACTGGAGTGGTGTCCCAACACAGAGCACAGCCCCTATGCCCTGGGTGA
CCATCTTGCAGCCCTTCCCTTGGACAGTCCCATCTTCTCAGCCTCAGCATAACCGGGTCAAGGAAGACCT
GCTGGAGCTGATGATGCTACAGAACGCACAGATGCACCAGCTGCTACTGGGCCAACTGGTGGCAGATGCC
CTGAACCCAGGGCCAGAGTGGCCCAGCCCACCGGTCCACACCGACAGTCACGAGGAGCAGATGGAGGAAG
AGATGGAGATGCAGGAGCAAGAGCCTTTGGTTTACCACCATCACTACTTGCCTTGCCCAGTGACTCCCTT
GGGTCCCATGTCACTCTGGCCAGCCTCCTTCCTCCCTGTTCCCCCACATCAGCCTCCCTGGCAGGGTGAA
CCGAGAATTCAGCACCAGCCCCCTGCCTCCAGGCAAGAGGAGGTGAGAGATGTGCCCCCACCCCCACCCC
CCAGTGCAACGGGGACTGTTGGTGCAGATGTACCTCCAGCTTCAGACTACTATGATGCGGAGAGCCTGCC
ATGA

Translation (187 aa):
MASLGSGNWSGVPTQSTAPMPWVTILQPFPWTVPSSQPQHNRVKEDLLELMMLQNAQMHQLLLGQLVADA
LNPGPEWPSPPVHTDSHEEQMEEEMEMQEQEPLVYHHHYLPCPVTPLGPMSLWPASFLPVPPHQPPWQGE
PRIQHQPPASRQEEVRDVPPPPPPSATGTVGADVPPASDYYDAESLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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