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Report for CCDS50170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50170.1 Public Mus musculus 17 Themis3 23 108 98 CCDS HistoryNCBI Gene:74556Re-query CCDS DB by CCDS ID:50170.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024914.3 ENSMUSP00000024914.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024914.3Link to Ensembl Protein Viewer:ENSMUSP00000024914.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000024914Re-query CCDS DB by Protein ID:ENSMUSP00000024914
Original member Current member NCBI NM_028998.2 NP_083274.1 Accepted alive Link to Nucleotide Sequence:NM_028998.2Link to Protein Sequence:NP_083274.1Re-query CCDS DB by Nucleotide ID:NM_028998Re-query CCDS DB by Protein ID:NP_083274Link to BLAST:NP_083274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083274.1 569 Q9CU24 569 100% 0 0

Chromosomal Locations for CCDS 50170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 66555252 66556264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66559547 66560020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66593149 66593283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66594447 66594534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGAGCAAACTTGGGACTCTTACATCAGTTCCTTAAATCAGAACTCTTTGCCCAGACAAGTGGAGGTGA
CCCAGGGAAGATATTCAGGGTCACTTGAAAACCTGTCATTCTCCAAAGGGGATATCATCACGGTGGTGGA
CCTGGAGCCAGTTTTCGTCAGAGCAGAACTGAAGGACGGTGATCAAGTTCTGGACGTGGTCACTATACCT
CTTAGATATGAAGGAAACTTCCAACTGATGGCAGACCCGGTTTCTTTTGAAACTGTGGCTGATTTAACCC
GTTCTGTCCGACTTCCCCAGAGTCCTGTGGCCCCTAGAAGTCCTCCCCGCTTCCAGAACTCAATCCCCAT
CTCCGCAGACAATTTGCCCATGAAGCTCAGGAAAGGAGAAACACTGTCCTTAATTGGCTTTCAAGAGAGT
CGGGGGAGGAGGCTGCTGCAATGCAAGGTGCTGAGGAAGAAGCCACCGCTGACAGTGCTCCTCCCCATGG
ACTGCAGGGGCCACTTCCTGGAGTGCCAGGACGACAGGTTCTACTCCATTGACACCATCGTGAGGTGGAA
GATGCTTGCAGGGAGGAAACGCACGGTTAGAGTGCAAGCAAGACATCACCCGAAGCTCCTTGGCCCCCTG
GTTCCAGAGCACTTTCGTGGACATTTAGTTTTGTATCCCTGTTTCTCAGTGACGGCAAATCTGCTAGGTG
AGACCCGGGTTAGCATCCCCTCCGATCTGGATATCAGTGTTACTGAGATTGCCCGCCTCGATCGTAAGCC
CAGGACAACGATGAGACAAATATACAGCATGGAAGAAAGCAAGTTCCCAGTGAGAGTTAAAATAATGAAT
GTGGTCCAGTCGGAGAGCAAGGAGTACCCAAAGCCTCTGAAACGTGGGCAGCTCTTAACCATCCTCAAGA
CTGAAGAGGTGAAAAAATTCGTTGCCTCTGAGATTTCCCAAGGAAAGAAAGGGAAGTGTTTTCTCGTCCC
ATACACCTATCAGGGCCTGGTGCTTAGGAGAGGTCGTTATTTTTATGCTGTCTCTGATGTTGCTGCTGCC
ATGAAGCATGGAGAGCTCTGCTTCCAGGCCTCCCAGGACTACACCTCCTACCTGGGATCGTTTGCATCTT
TCAGAGCCAACGAGTGCTTCCTGGCCCTGAAGAAGAGTGTGGTTTCCGCCGAGATTCACGGTGAGCTGCA
CAGGGTGGAAGTGCTCAAGTGCCTGAACATTGCCACTAAAGCCCACGTCAAACTGCCCTTGTTTGCCGTA
GGTAAGTTCCTGGAGCTGTTTGACGGCGCTAGGCCAGGGACCCTGCAGGAGCTATGCCAAGTCACAAGAC
TGCCGTGCCACGTCAGAGTGACCAGCCCAGATCCCTCCATGACTGTAGACCCTCTATATGGAACTAAGGA
ACTGAGAATTGAAAATGTCATCATTGAACAATGCCTCATAGCCAAAGATGAACCAACACTGGAGGACATA
ATCTCCTCAGCAGACATGTACAGGGAGTGGCCAGAAACCACATTTGAAATCCCGATTGAGAAGATAAGCT
GTGAGGTGTTAGTGGTAGAAGAGCGTTCGTGGATAGCTGATGTCAGGAAAGAGAGATGCAGGCCTCTCCA
GAGCATCCAGGAGGTCACTAAGGAGTCTCTGGCCTTTAGTAATTGCTTGGTTATTCGCCGTCCACCACCA
CCTGTTCCAAAGCCCAGAAGTTTGTTCTAA

Translation (569 aa):
MEQTWDSYISSLNQNSLPRQVEVTQGRYSGSLENLSFSKGDIITVVDLEPVFVRAELKDGDQVLDVVTIP
LRYEGNFQLMADPVSFETVADLTRSVRLPQSPVAPRSPPRFQNSIPISADNLPMKLRKGETLSLIGFQES
RGRRLLQCKVLRKKPPLTVLLPMDCRGHFLECQDDRFYSIDTIVRWKMLAGRKRTVRVQARHHPKLLGPL
VPEHFRGHLVLYPCFSVTANLLGETRVSIPSDLDISVTEIARLDRKPRTTMRQIYSMEESKFPVRVKIMN
VVQSESKEYPKPLKRGQLLTILKTEEVKKFVASEISQGKKGKCFLVPYTYQGLVLRRGRYFYAVSDVAAA
MKHGELCFQASQDYTSYLGSFASFRANECFLALKKSVVSAEIHGELHRVEVLKCLNIATKAHVKLPLFAV
GKFLELFDGARPGTLQELCQVTRLPCHVRVTSPDPSMTVDPLYGTKELRIENVIIEQCLIAKDEPTLEDI
ISSADMYREWPETTFEIPIEKISCEVLVVEERSWIADVRKERCRPLQSIQEVTKESLAFSNCLVIRRPPP
PVPKPRSLF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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