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Report for CCDS50320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50320.1 Public Mus musculus 18 Cxxc1 23 108 98 CCDS HistoryNCBI Gene:74322Re-query CCDS DB by CCDS ID:50320.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025444.7 ENSMUSP00000025444.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025444.7Link to Ensembl Protein Viewer:ENSMUSP00000025444.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025444Re-query CCDS DB by Protein ID:ENSMUSP00000025444
Original member Current member NCBI NM_028868.3 NP_083144.1 Accepted alive Link to Nucleotide Sequence:NM_028868.3Link to Protein Sequence:NP_083144.1Re-query CCDS DB by Nucleotide ID:NM_028868Re-query CCDS DB by Protein ID:NP_083144Link to BLAST:NP_083144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083144.1 660 Q9CWW7 660 100% 0 0

Chromosomal Locations for CCDS 50320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 74216480 74216482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74217167 74217285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74217389 74217489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74217761 74217996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74218086 74218277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74218629 74218655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74218732 74218977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74219131 74219238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74219383 74219567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74219838 74220045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74220121 74220231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74220357 74220406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74220509 74220605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74220828 74220980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74221059 74221205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGGAAGGAGATGGCTCAGACCTGGAACCTCCGGATGCCGGGGACGACAGCAAGTCTGAGAATGGGGAGA
ACGCTCCCATCTACTGCATCTGTCGCAAACCGGACATCAATTGCTTCATGATTGGATGTGACAACTGCAA
CGAGTGGTTCCATGGAGACTGCATCCGGATCACTGAGAAGATGGCCAAGGCCATCCGGGAATGGTACTGT
CGGGAGTGCCGAGAGAAGGACCCGAAGCTGGAGATTCGTTACCGCCACAAAAAGTGCCGGGAGAGGGATG
GCAGTGAGCGGGCCGGCAGTGAGCCCCGGGATGAGGGAGGAGGGCGCAAGAGGCCGGCTTCAGATCCAGA
GCTGCAGCGCCGGGCAGGGTCAGGGACAGGGGTTGGGGCCATGCTTGCTCGGGGCTCTGCTTCCCCCCAC
AAATCTTCTCCACAGCCCTTGGTGGCCACACCTAGCCAGCACCACCACCAACAGCAGCAGCAGCAGCAGC
AGCAAATCAAACGATCAGCTCGGATGTGTGGTGAGTGCGAGGCCTGCCGACGCACTGAGGACTGTGGCCA
CTGTGACTTCTGCCGTGACATGAAGAAGTTTGGGGGCCCCAACAAGATCCGGCAGAAGTGCCGGCTTCGT
CAGTGTCAGCTGCGGGCACGGGAATCGTACAAGTACTTCCCTTCCTCGCTCTCGCCGGTGACACCCTCAG
AGGCCCTGCCAAGGCCCCGCCGGCCACCACCCACTCAACAGCAGCCACAGCAGTCCCAGAAGCTGGGGCG
TATTCGTGAAGATGAGGGGACAGTGTTGTCATCAGTGGTTAAGGAGCCACCAGAGGCTACAGCAACACCT
GAGCCACTTTCAGATGAGGACCTAGCACTGGACCCCGATCTGTACCAGGACTTCTGTGCTGGGGCCTTTG
ATGATCACGGCCTACCCTGGATGAGCGATGCAGAAGAGTCCCCGTTCCTGGATCCTGCACTGAGGAAGCG
GGCGGTGAAGGTGAAGCACGTGAAGCGCCGGGAGAAGAAGTCCGAGAAGAAGAAGGAGGAGAGGTACAAA
CGGCATCGACAGAAGCAGAAACATAAAGACAAATGGAAACACCCAGAGAGGGCTGATGCCAAGGACCCTG
CATCTCTCCCGCAGTGCCTGGGGCCTGGCTGTGTGCGGGCTGCCCAGCCTGGGTCCAAGTATTGTTCAGA
TGACTGTGGCATGAAGCTGGCAGCCAACCGAATCTATGAGATCCTCCCCCAGCGCATCCAGCAGTGGCAG
CAAAGCCCCTGCATCGCTGAAGAGCACGGCAAGAAGCTACTTGAGCGGATCCGCCGTGAGCAGCAGAGCG
CCCGCACCCGCCTTCAGGAAATGGAGCGCAGATTCCACGAGCTTGAGGCCATCATTCTTCGCGCTAAGCA
GCAAGCTGTGCGAGAGGATGAGGAGAACAACGAGAACGACAGTGATGACACAGATCTGCAGATCTTCTGC
GTCTCCTGCGGGCATCCCATCAACCCACGAGTTGCCTTGCGTCACATGGAACGTTGCTATGCTAAGTATG
AGAGCCAGACGTCTTTTGGGTCCATGTACCCCACACGCATCGAGGGGGCTACCCGACTCTTCTGTGATGT
CTACAATCCTCAGAGCAAGACATATTGTAAGCGGCTCCAGGTGCTGTGTCCTGAGCACTCCCGGGACCCC
AAAGTGCCAGCTGATGAGGTCTGTGGGTGTCCACTTGTACGTGATGTCTTTGAGCTCACAGGTGACTTCT
GCCGCCTGCCCAAGCGCCAGTGTAATCGCCATTATTGCTGGGAGAAGCTTCGGCGTGCAGAAGTGGACTT
GGAGCGCGTGCGGGTGTGGTACAAGCTGGACGAGCTCTTTGAGCAGGAACGTAATGTACGCACAGCCATG
ACCAACAGAGCAGGGCTACTTGCCCTGATGCTTCACCAAACGATCCAACACGATCCACTCACTACCGACC
TTCGCTCTAGTGCCGACCGCTGA

Translation (660 aa):
MEGDGSDLEPPDAGDDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYC
RECREKDPKLEIRYRHKKCRERDGSERAGSEPRDEGGGRKRPASDPELQRRAGSGTGVGAMLARGSASPH
KSSPQPLVATPSQHHHQQQQQQQQQIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLR
QCQLRARESYKYFPSSLSPVTPSEALPRPRRPPPTQQQPQQSQKLGRIREDEGTVLSSVVKEPPEATATP
EPLSDEDLALDPDLYQDFCAGAFDDHGLPWMSDAEESPFLDPALRKRAVKVKHVKRREKKSEKKKEERYK
RHRQKQKHKDKWKHPERADAKDPASLPQCLGPGCVRAAQPGSKYCSDDCGMKLAANRIYEILPQRIQQWQ
QSPCIAEEHGKKLLERIRREQQSARTRLQEMERRFHELEAIILRAKQQAVREDEENNENDSDDTDLQIFC
VSCGHPINPRVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDP
KVPADEVCGCPLVRDVFELTGDFCRLPKRQCNRHYCWEKLRRAEVDLERVRVWYKLDELFEQERNVRTAM
TNRAGLLALMLHQTIQHDPLTTDLRSSADR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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