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Report for CCDS40514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40514.1 Public Mus musculus 8 Capn9 23 108 98 CCDS HistoryNCBI Gene:73647Re-query CCDS DB by CCDS ID:40514.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093033.5 ENSMUSP00000090717.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093033.5Link to Ensembl Protein Viewer:ENSMUSP00000090717.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093033Re-query CCDS DB by Protein ID:ENSMUSP00000090717
Original member Current member NCBI NM_023709.4 NP_076198.2 Accepted alive Link to Nucleotide Sequence:NM_023709.4Link to Protein Sequence:NP_076198.2Re-query CCDS DB by Nucleotide ID:NM_023709Re-query CCDS DB by Protein ID:NP_076198Link to BLAST:NP_076198.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076198.2 690 Q9D805 690 100% 0 0

Chromosomal Locations for CCDS 40514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124576145 124576357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124589033 124589102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124591680 124591798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124594629 124594762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124597499 124597667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124598710 124598793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124600402 124600487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124603886 124603963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124604190 124604350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124605406 124605563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124605696 124605904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124607955 124607991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124609093 124609173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124611503 124611560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124613417 124613481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124613821 124613889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124614548 124614626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124616153 124616269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124617433 124617491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 124618482 124618508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGCCTTACCTGCATCGGTCCCTGAGGCCACAGCCACAGCCAGTCCCCGGGGATGCCAGGACTATCCACT
CCTCAGGTCAGAGCTTTGAGCAGCTGAGGCAGGGCTGCCTGCAGTCTGGCACCTTGTTTGAGGATGCTGA
CTTCCCTGCCAGCAATGTCTCCCTGTTCTACAGCGAGAGGCCCCAGGTCCCCTTTGTGTGGAAACGGCCA
GGGGAAATTGTGGAAAAACCAGAATTCATTCTTGGAGGGGCCACCAGGACCGACATTTGCCAAGGGGAGC
TGGGAGACTGCTGGCTCCTGGCGGCCATTGCCTCCCTAACCCTCAATCAGAAAGCACTGACCAGGGTGGT
TCCCCAGGACCAAGGATTTGGTTCTGGCTATGCCGGGATATTTCATTTCCAGTTCTGGCAGCACAGTGAG
TGGCTGGACGTAGTGATTGATGACCGCCTGCCCACCTTCAAGGACCGCCTGGTCTTCCTCCACTCTGCTG
ATCACAATGAGTTCTGGAGCGCACTGCTGGAGAAAGCCTATGCCAAGCTTAACGGGAGTTATGAGGCACT
GAAGGGAGGCAGTGCCATTGAAGCCATGGAAGACTTCACTGGGGGTGTGGCTGAGAACTTCCAAATCCGA
GAGGCACCAGAGGATTTCTTTGAGATTCTGGAGAAGGCTTTGAAGCGTGGTTCCTTGCTGGGATGCTCCA
TAGATACCCTGAATGCCTCAGAATCTGAAGCTCGAACATCTCTTGGTCTCATTAAGGGCCATGCCTACAC
CGTGACGGGGCTCGATCAGGTAAACTTCCATGGCCAGAGAATCAAGCTCATCAGAGTCCGTAACCCTTGG
GGCCAGGTGGAGTGGAACGGGCCATGGAGTGACAGCTCTCCTGAGTGGCGCTCTGTGGACCTGGAGGAGC
AGAAGCGCCTGGGCCACACTGCCCTTGATGACGGGGAGTTCTGGATGGCATTCAAAGACTTCAAGATCCA
TTTTGACAAAGTGGAGATCTGCAACCTCACACCTGATGCCCTGGAGGACAGCGCCCTCCACAGGTGGGAG
GTGACCATCCACCAAGGAAGCTGGGTCCGTGGCTCCACTGCTGGTGGCTGTCGCAACTTCCTGGACACCT
TCTGGACCAACCCTCAGATAAAGCTGTCCCTGACCGAGAGGGACGAGGGCCAGGAGGGCTGCACTTTCCT
AGCAGCCTTGATGCAGAAAGACCGCAGGAGGCTCAAGAGGTTTGGCGCCAACATGCTGACCATTGGCTAC
GCCATTTACCAGTGCCCAGACAAGGACGGACACCTGAGTAGGGACTTTTTCAGGTACCATGCCTCCCTGG
CCCGAAGCAAGACGTTCATCAACTTGAGAGAAGTCTCAGAGCGATTCCAGCTGCCCCCGGGAGACTATAT
CCTCATCCCCAGCACCTTTGAGCCGCATCAGGAGGCCGACTTCTGCCTGAGAATCTTCTCTGAGAAGAGA
GCTGTGACTCGGGACCTGGACGAGAACATAGACATTGACCTTCCTGAGCTTCCAAAGCCGACTCCACAGG
AGGAGGAAACAGAAGAGGAACAGCAGTTCCGGGCCCTGTTCCAGCGAGTTGCTGGCGAGGACATGGAGGT
GTCAGCTGAGGAGCTTGAATATGTTCTAAATGCTGTTCTGCAGAAGAAAACAGCCCTCAAGTTCAAGAGG
CTGAGCCTGCTGTCCTGCAGAAACATCATCTCTCTGATGGATACCAGTGGCAACGGGAAGCTGGAGTTTG
AAGAGTTCCGGGTCTTCTGGGACAAGCTGAAACACTGGATGGACCTGTTTCTCCAGTTCGATGTGGACAA
GTCTGGCACCATGTCTTCCTATGAGCTGCGGACGGCACTGAAAGCTGCAGGCTTTCAGCTGGGTGGCCAT
CTCCTGCAGCTGATTGTCCTCAGGTATGCAGATGAGGACCTCCAGCTGGATTTCGATGACTACCTCAACT
GCCTGGTGCGGCTGGAGAATGCAAGCCGGGTGTTCCAATCTCTCAGTGTGAAGAACAAGGACTTCATCCA
TCTCAACATAAACGAGTTCATCAGCCTGACCATGAACATCTGA

Translation (690 aa):
MPYLHRSLRPQPQPVPGDARTIHSSGQSFEQLRQGCLQSGTLFEDADFPASNVSLFYSERPQVPFVWKRP
GEIVEKPEFILGGATRTDICQGELGDCWLLAAIASLTLNQKALTRVVPQDQGFGSGYAGIFHFQFWQHSE
WLDVVIDDRLPTFKDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAENFQIR
EAPEDFFEILEKALKRGSLLGCSIDTLNASESEARTSLGLIKGHAYTVTGLDQVNFHGQRIKLIRVRNPW
GQVEWNGPWSDSSPEWRSVDLEEQKRLGHTALDDGEFWMAFKDFKIHFDKVEICNLTPDALEDSALHRWE
VTIHQGSWVRGSTAGGCRNFLDTFWTNPQIKLSLTERDEGQEGCTFLAALMQKDRRRLKRFGANMLTIGY
AIYQCPDKDGHLSRDFFRYHASLARSKTFINLREVSERFQLPPGDYILIPSTFEPHQEADFCLRIFSEKR
AVTRDLDENIDIDLPELPKPTPQEEETEEEQQFRALFQRVAGEDMEVSAEELEYVLNAVLQKKTALKFKR
LSLLSCRNIISLMDTSGNGKLEFEEFRVFWDKLKHWMDLFLQFDVDKSGTMSSYELRTALKAAGFQLGGH
LLQLIVLRYADEDLQLDFDDYLNCLVRLENASRVFQSLSVKNKDFIHLNINEFISLTMNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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