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Report for CCDS28062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28062.1 Public Mus musculus 16 2510009E07Rik 23 108 98 CCDS HistoryNCBI Gene:72190Re-query CCDS DB by CCDS ID:28062.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053336.7 ENSMUSP00000062303.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053336.7Link to Ensembl Protein Viewer:ENSMUSP00000062303.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053336Re-query CCDS DB by Protein ID:ENSMUSP00000062303
Original member Current member NCBI NM_001001881.2 NP_001001881.1 Accepted alive Link to Nucleotide Sequence:NM_001001881.2Link to Protein Sequence:NP_001001881.1Re-query CCDS DB by Nucleotide ID:NM_001001881Re-query CCDS DB by Protein ID:NP_001001881Link to BLAST:NP_001001881.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001881.1 248 Q6GQU0 248 100% 0 0

Chromosomal Locations for CCDS 28062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21653202 21653758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21694216 21694405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGAGTGCGGCCACGGCGCCCGAGCGCGGCTGGAAGAGCGAGAAAGTGGACGAGGCGCAGGCCCTGGCGC
GGAGCTGCGCCGCCCGCAGACCCGACTTCCAGCCGTGCGACGGGCTGTCCATCTGTGCCACGCACAGCCA
CGGCAAGTGCTTCAAGCTGCACTGGTGCTGTCACCTGGGATGGTGTCACTGCAAATATGTGTATCAGCCT
ATGACCCCCGTGGAGCAGCTCCCAAGCACAGAGATCCCTGCAAAGCCCCGAGAGCCGACTAACACCATTC
AAATCTCCGTCTCGCTCACTGAACACTTTTTGAAATTTGCGTCTGTCTTCCAGCCTCCGCTTCCCCCTGA
CTCGCCAAGGTACTGTATGATTTCCGATCTCTTCATCGACAACTATCAGGTTAAATGTATTAATGGGAAG
ATGTGCTATGTGCAGAAGCAGCAGGCGCCCCACTCCCAGAAGATGAGCCCTGAGGAGGTCTCTGCACACG
ATGCCTTAATTTCTAAAGAGAGTGACACTCCGAAACTGGGTCACTGCTCCTCCCCTTCCGGTTCCGAGGA
CTCGGGGATCAACGCCATTGGGGCTCACTATGTGGAATCCTGTGATGAGGACACAGAAGAAGGGGCGGAG
CTGAGTTCCGAAGAAGATTACAGCCCTGAGAGCAGCTGGGAACCCGATGAGTGCACCCTGCTCTCCCCAT
CGCAGTCGGATCTGGAAGTGATTGAAACGATGGAGACCACTGTGTAG

Translation (248 aa):
MSAATAPERGWKSEKVDEAQALARSCAARRPDFQPCDGLSICATHSHGKCFKLHWCCHLGWCHCKYVYQP
MTPVEQLPSTEIPAKPREPTNTIQISVSLTEHFLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGK
MCYVQKQQAPHSQKMSPEEVSAHDALISKESDTPKLGHCSSPSGSEDSGINAIGAHYVESCDEDTEEGAE
LSSEEDYSPESSWEPDECTLLSPSQSDLEVIETMETTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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