NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16900.1 Public Mus musculus 2 Tpx2 23 108 98 CCDS HistoryNCBI Gene:72119Re-query CCDS DB by CCDS ID:16900.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028969.8 ENSMUSP00000028969.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028969.8Link to Ensembl Protein Viewer:ENSMUSP00000028969.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028969Re-query CCDS DB by Protein ID:ENSMUSP00000028969
Original member Current member EBI ENSMUST00000109816.7 ENSMUSP00000105441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109816.7Link to Ensembl Protein Viewer:ENSMUSP00000105441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109816Re-query CCDS DB by Protein ID:ENSMUSP00000105441
Original member Current member EBI ENSMUST00000164120.7 ENSMUSP00000128888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164120.7Link to Ensembl Protein Viewer:ENSMUSP00000128888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164120Re-query CCDS DB by Protein ID:ENSMUSP00000128888
Original member Current member EBI ENSMUST00000178997.7 ENSMUSP00000136457.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178997.7Link to Ensembl Protein Viewer:ENSMUSP00000136457.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178997Re-query CCDS DB by Protein ID:ENSMUSP00000136457
Original member Current member NCBI NM_001141975.1 NP_001135447.1 Accepted alive Link to Nucleotide Sequence:NM_001141975.1Link to Protein Sequence:NP_001135447.1Re-query CCDS DB by Nucleotide ID:NM_001141975Re-query CCDS DB by Protein ID:NP_001135447Link to BLAST:NP_001135447.1
Original member Current member NCBI NM_001141976.1 NP_001135448.1 Accepted alive Link to Nucleotide Sequence:NM_001141976.1Link to Protein Sequence:NP_001135448.1Re-query CCDS DB by Nucleotide ID:NM_001141976Re-query CCDS DB by Protein ID:NP_001135448Link to BLAST:NP_001135448.1
Original member Current member NCBI NM_001141977.1 NP_001135449.1 Accepted alive Link to Nucleotide Sequence:NM_001141977.1Link to Protein Sequence:NP_001135449.1Re-query CCDS DB by Nucleotide ID:NM_001141977Re-query CCDS DB by Protein ID:NP_001135449Link to BLAST:NP_001135449.1
Original member Current member NCBI NM_001141978.1 NP_001135450.1 Accepted alive Link to Nucleotide Sequence:NM_001141978.1Link to Protein Sequence:NP_001135450.1Re-query CCDS DB by Nucleotide ID:NM_001141978Re-query CCDS DB by Protein ID:NP_001135450Link to BLAST:NP_001135450.1
Original member Current member NCBI NM_028109.4 NP_082385.3 Accepted alive Link to Nucleotide Sequence:NM_028109.4Link to Protein Sequence:NP_082385.3Re-query CCDS DB by Nucleotide ID:NM_028109Re-query CCDS DB by Protein ID:NP_082385Link to BLAST:NP_082385.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135447.1 745 A2APB8 745 100% 0 0
NP_001135448.1 745 A2APB8 745 100% 0 0
NP_001135449.1 745 A2APB8 745 100% 0 0
NP_001135450.1 745 A2APB8 745 100% 0 0
NP_082385.3 745 A2APB8 745 100% 0 0

Chromosomal Locations for CCDS 16900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152867252 152867357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152869653 152869775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152873090 152873216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152875541 152875672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152876567 152876692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152880104 152880225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152881015 152881166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152882194 152882362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152884174 152884312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152885011 152885227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152888103 152888195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152889146 152889322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152890491 152890637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152891443 152891554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152892113 152892300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152893584 152893691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2238 nt):
ATGTCACAAGTCCCTACTACTTACTCTTTCGATGCCCCCACCGACTTTATCAATTTTTCATCTTTGGATG
CTGAAGAGGATACTGAAAATATAGACTCATGGTTTGATGAGAAGGCCAACTTGGAGAACAAGTTTCTTCG
ACAGAGGGGAATAGGCGAGCCTTTTCAGGGGAAGAATTCCTTGAGAAAAGCCAAACTTCAACAGGGCTTC
GTCACACCGTTGAAGGCAGTTGACAACACTTACCACAAAGAGACAGAAAAGGAAAATCTTCAGAAACAGT
CTATCCCATCAAATGATTGTTCTTCCCTGGATGCTAAGAGAGCTGTATCAGGAAATACTCCTGTCCAGCC
TCAGAGAAGATCTATTAGACTCTCTGCTCAGAAGGATTTGGAGCAGAAAGAGAAAAACCATGTTGCCTCT
GTTGAAATGAAAGCCAAGAGATGTGTTGCTCCGGCCACTGATTGTCCCCCCCAGAAAAGAATGAAAGTTT
CTCATAAAAAGAAACTGGAGGAAGAGGAGGAAGGCAGTGCTCCAGCTACTTCAAGAAAGAATGAAAGAGA
AACCCTGGAGAAAGCCAAGGGCAAGCACACTGTGCCAGGTGTGCCACCTGCAAGGGAGAAGGTTCTAAAG
AGTACTGAGGAGCAGGAGATAGAGAAAAGGCTGCGGATGCAGCAGGAGGTGGTGGAGCTGCGCAGGAAAA
ACGAAGAGTTCAAGAAGCTCGCGCTCGCAGGGCCAGGGCAACCTGTGAAGAAGTCCACGAGCCAGGTTAC
CAAGACAGTTGACTTTCACTTCCTCACAGATGAGCGAATCAAGCAACATCCCAAGAACCAGGAAGAGTAT
AAGGAAGTGAACTTCATGTCTGAACTTCGGAAGCATTCTTCCACGCCTGCCCGAGGAACCAGAGGATGCA
CTATCATTAAGCCTTTCAACCTGTCCAAAGGGAAGAAAAGAACATTTGATGAAGCAGCTTCTACGTATGT
GCCCATTGCACAGCAGGTTGAAGCCTTCCACAAACGAACCCCCAATAGATACCATCTGAGGAACAAGAAG
GACGAGAGCTTGTTACCCTCCAAATCTGTGAACAAGATTGCACGAGACCCCCAGACCCCCATACTGCAGA
CCAAATATCGTACAAGGGCTGTGACTTGCAAAAGTACTGCAGAGCAGGAGGCCGAGGAGCTTGAGAAACT
GCAACAATACAAATTCAAAGCACGGGAACTTGATCCTAGAATTTTTGAAAGTGGCCCCATCTTGCCCAAG
AGAGCACCTGTTAAACCTCCTACTCAGCCTGTTGGTTTTGATTTGGAAATTGAGAAACGAATTCATGAGC
GAGAGTCAAAGAAAAAAACAGAAGATGAACAATTTGAATTTCATTCTAGACCTTGTCCTACTAAGATCTT
GGAAGATGTCGTGGGTGTTCCTGAAAAGAAGGTAATTCCAGCTACTGTCCCGAAGTCGCCAGTTTTTGCA
TTGAAGAACAGGATCCGAGTGCCCATCAAAGATGAGGAAGAGGAGAAACCAGTAGTGATAAAAGCTCAAC
CTGTGCCACATTATGGGGTGCCTTATAAGCCCCACATCGCAGAGGCAAGAAATGTGGAGGTGTGCCCGTT
CTCCTTTGATACCCGGGACAAAGAACGCCAGTTGCAGAAGGAGAAAAAAATAAAAGAGATGCAGAAAGGG
GAGGTGCCCAAGTTCAAGGCACTTCCTGTGCCCCATTTTGACACCATTAACCTGCCAGAGAAAAAGGTAA
AGAACGTGACTCAAGCTGAGCCTTTCTCCCTGGAGACAGACAAGAGAGGCGCCTACAAGGCTGAGATGTG
GAAGCACCAGCTGGAGGAAGAGCAGAAGCAGCAGAAGGACGCCGCTTGCTTCAAGGCTCGTCCAAACACC
GTCATCTTCCAAGAGCCCTTCGTTCCCAAGAAGGAGAAAAAATCACTGGCTGAGAACCCTTCTGGTTCTC
TAGTTCAGGAACCTTTTCAGCTGGCCACCGAGAGGAGAGCCAAAGAGCGGCAGGAGCTGGAGAAGAAAAT
GGCTGAAGTAGAGGCCTGGAAACTGCAGCAGTTGGAGGAAGTCAGGCAGCAGGAAGAGGAGCAGCAGAAG
GAGGAGTTAGCCAGGCTCCGGAAAGAACTGGTGCACAAGGCAAATCCAATACGGAAGTACGCAGCAGTGG
AGGTGAAATCTAGCGAGCTGCCTCTGACTGTGCCGGTGTCTCCTAAGTTCTCCACTCGGTTCCAGTAG

Translation (745 aa):
MSQVPTTYSFDAPTDFINFSSLDAEEDTENIDSWFDEKANLENKFLRQRGIGEPFQGKNSLRKAKLQQGF
VTPLKAVDNTYHKETEKENLQKQSIPSNDCSSLDAKRAVSGNTPVQPQRRSIRLSAQKDLEQKEKNHVAS
VEMKAKRCVAPATDCPPQKRMKVSHKKKLEEEEEGSAPATSRKNERETLEKAKGKHTVPGVPPAREKVLK
STEEQEIEKRLRMQQEVVELRRKNEEFKKLALAGPGQPVKKSTSQVTKTVDFHFLTDERIKQHPKNQEEY
KEVNFMSELRKHSSTPARGTRGCTIIKPFNLSKGKKRTFDEAASTYVPIAQQVEAFHKRTPNRYHLRNKK
DESLLPSKSVNKIARDPQTPILQTKYRTRAVTCKSTAEQEAEELEKLQQYKFKARELDPRIFESGPILPK
RAPVKPPTQPVGFDLEIEKRIHERESKKKTEDEQFEFHSRPCPTKILEDVVGVPEKKVIPATVPKSPVFA
LKNRIRVPIKDEEEEKPVVIKAQPVPHYGVPYKPHIAEARNVEVCPFSFDTRDKERQLQKEKKIKEMQKG
EVPKFKALPVPHFDTINLPEKKVKNVTQAEPFSLETDKRGAYKAEMWKHQLEEEQKQQKDAACFKARPNT
VIFQEPFVPKKEKKSLAENPSGSLVQEPFQLATERRAKERQELEKKMAEVEAWKLQQLEEVRQQEEEQQK
EELARLRKELVHKANPIRKYAAVEVKSSELPLTVPVSPKFSTRFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH