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Report for CCDS15079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15079.1 Public Mus musculus 1 Stk11ip 23 108 98 CCDS HistoryNCBI Gene:71728Re-query CCDS DB by CCDS ID:15079.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027414.15 ENSMUSP00000027414.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027414.15Link to Ensembl Protein Viewer:ENSMUSP00000027414.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000027414Re-query CCDS DB by Protein ID:ENSMUSP00000027414
Original member Current member EBI ENSMUST00000113553.1 ENSMUSP00000109182.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113553.1Link to Ensembl Protein Viewer:ENSMUSP00000109182.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113553Re-query CCDS DB by Protein ID:ENSMUSP00000109182
Original member Current member NCBI NM_027886.3 NP_082162.3 Accepted alive Link to Nucleotide Sequence:NM_027886.3Link to Protein Sequence:NP_082162.3Re-query CCDS DB by Nucleotide ID:NM_027886Re-query CCDS DB by Protein ID:NP_082162Link to BLAST:NP_082162.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082162.3 1072 Q3TAA7 1072 100% 0 0

Chromosomal Locations for CCDS 15079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75521789 75521849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75524683 75524888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75525088 75525162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75525419 75525514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75525852 75525959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75526087 75526158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75527058 75527184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75527363 75527466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75527576 75527671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75527802 75527843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75527969 75528118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75528309 75528393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75528911 75529261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75529411 75529616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75529934 75530050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75530173 75530350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75532303 75532515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75532627 75532730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75533560 75533657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75533753 75533931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75534172 75534253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75534404 75534474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75535178 75535425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75536086 75536235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3219 nt):
ATGACGACCGCTCCGCGGGATTCAGTAGTGTGGAAGCTGGCGGGACTTTTGCGGGAGTCGGGCGATGCGG
TTCTCTCTGGCTGTAGCACACTGAGCCTGCTGACAGCCACACTGCAGCAGCTGAACAGAGTGTTTGAACT
GTACCTGGGGCCATGGGGCCCAGGCCAGACAGGCTTTGTGGCTCTTCCCTCCCACCCTGCAGACTCACCC
GTCATCCTCCAGCTTCAGTTCCTCTTCGATGTGCTGCAGAAAACACTGTCACTCAAGCTGGTCCATATCC
CTGGTGTTGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTACGGCAGCTGGAGCTTCGAGG
AGTCCCTATCCACAGCCTGTGTGGCCTCCGTGGCATCTACTCACAGCTGGAGTCCCTGGTTTGCAACAGA
AGCATCCAGGCACTGGAGGAGCTCTTGTCAGCCTGTGGTGGGGATCTCTGCTCTGCCCTCCCCTGGCTAG
CCTTGCTTTCTGCCGACTTCAGCTACAATGCGCTCAGGAGCTTAGACAGCTCCCTGCGTCTCCTGTCCGC
TCTCCGCTTCCTCAACCTGAGCCACAATCATCTCCAGGACTGCAAAGGCTTCCTGATGGATTTATGTGAG
CTGTACCATTTGGACATCTCCTATAACCACCTGCGCTTGGTGCCAAGAGTGGGACCATCAGGGGCTGCGC
TGGGGACTTTGATACTGAGGGCCAATGAGCTCCGCAGCCTTCAGGGCCTGGAGCAGCTAAAGAACCTGCG
GCATCTCGATGTGGCCTATAACCTTCTAGAAGGACACACAGAGCTTGCGCCATTATGGCTGCTGGCCGAG
CTCCGTAAGCTCTATCTGGAAGGTAACCCTTTGTGGTTCCACCCTGCACACCGTGCAGCCACCGCCCAGT
ACTTGTCACCACGGGCCAGGGATGCTGCTCATGGCTTCCTGCTTGATGGCAAGGTTTTGTCCCTGAAGGA
TCTTCAGCAAACTTCAGACTCTTCAGGGCTTGGTCCCGTGATCCAGCCTCTGTCCTGGCCAGTGGGGAGT
ACCACTGAAACCTCAGGTGGCCCTGAGTTGAGTGATAGCCTCTCCTCAGGGGGCATTGTGGCCCAGGCCC
CGCTTCGTAAGGTTAAGAGCCGAGTCCGTGTGAGGCGGGCTAGCATCTCTGAGCCCAGTGACACAGACCC
AGAGCTCCGAACTCTGGACCCCTCCCCAGCTGGGTGGTTTGTGCAACAACACCGGGAACTGGAGCTGCTG
GCCAGCTTCCGGGAGCGGTTTGGCTGTGACTGGCTGCAGTACAGGAGCCACCTGGAGACCATGGGGAGCT
CCCCTCTTAGCACCACCAAGACTCCTGCCCTTAGCACCCCTCCTCTGGATGTCCAGAACCTGGAGACTGT
ATGCAGCCCTCCAGCCATAGAGGACGACACTAAGGAATCGCCAGAGAAGGTGTCAGAGGAAGGCAGGGTG
GAGCCAGAGCCCCAGGAAGAAGAGAGGGAAGAACAGGATAAAGAAGAGGGATCGAGAGAGGACCTGGAGG
AGGAGGAGGAGCAGGAGCAGAAGGCAGTGGAAGCTGAGCTCTGTCGCCCCATGTTGGTATGTCCCTTGCA
GGGACTTGGGGGTGTGCAAGGCAAGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGAA
CTCCAAGCAGCTCGGACTCTGGAGCGGCTGGAGCTACAGAGTCTGGTGGCAGCTGAGCTAGAGTCCGAGA
CTGAAACCCAAGGAGAACCAGTGTCTGAGGGCTCAGGTCCATTCCCCGGGGCTCCAGTTCTTGTTCTTCG
CTTTTCTTACATTTGTCCCGACCGGCAGCTACGTCGATATGCTGTGCTGGAGCCGGAGGCCCGTGAAGCC
GTCCAGGAGCTGCTTGCAGTACTGACCCCATTCACCAGTGTGAAAGAACAGCAGCCTGGGGCAAACAAGG
ACCCACAGGGGGCCAGATTCCAGTGTCTGCGTTGTAGCTGTGAGTTCAAGCCAGAGGAGTCCAGATTGGG
ACTGGAGAGTGATGAAGGCTGGAAGCCTCTGTTTCAAAATACAGAATCTCCTGTTGTATGTCCAAACTGT
GGGAGTGACCACGTGGTTCTCCTAGCTGTGTCTGGGGAAGTCCCGAATAGAGAGCAGAACCAGGAAGAGC
AGTCAGCAGATTCTGCCTGTGACCTCGCTGACCACGGTGGCTGTCCCAGCAGGCCTGATGGCATCCCACC
TCAGACATCCATATCCCATGACCGTAGCAGCTGGAGTCTCAGCCCATCCCCTGGATGCTCTGGTTTTCGC
TCTGTGGACCACCGACTCCGGCTCTTCCTGGATGTCGAGGTGTTCAGTGACTCCGAGGAGGAGTTCCAGT
GCTGTATCAAGGTGCCAGTGGTGTTAGCAGGCCACACGGAGGAGTTTCCGTGCCTTGTGGTTGTGTCTAA
CCACATGCTTTACCTGTTGAAGGTGCTAGGGGCCATCTGCGGGCCTCCTGCTAGCTGGCTCCAGCCCACC
CTGGCCATTGCTCTGCAGGACCTGAGTGGCATGGAGCTCGGCCTCGCAGGCCAGAGCCTTCGTCTGGAGT
GGGCAGCTGGCACTGGCAGCTGTGTACTACTGCCCCGAGATGCTAGGCAGTGCCGAGCCTTCCTTGAGGA
GCTCACTGGTGTATTGCAGTCTCTGCCTCGTACCCAAAGGAACTGCATCAGTGCCACAGAGGAGGAGGTG
ACCCCGCAGCATCGGCTCTGGCCATTGCTGGGAAAAGACCCTTCTGCAGAGGTGCCCCAGTTTTTCTACC
TTCGGGCCTTCCTGGCTGAAGGCTCCTCTACCTGTCCTGTGTCCCTGTTGCTGACGTTGTCCACCCTGTA
CCTATTAGATGAAGACCCTGGAGGGTCCCATGCAGAGTCTCCTCTCCCAGTGGTGTCTGATGAAACCTCA
GAGCAGCCTGCTTCTCTGGGGCCAGGTCCTTCCCTGCAGGTCAGGGAGCAGCAACCACTCAGCTGTCTGA
GTTCTGTGCAGCTGTATCGCACAAGCCCTTTGGACCTGCGGCTGATCTTCTATGATGAGGTGTCTCGACT
GGAGAGTTTCTGGGCCCTTCATGTTGTGTGTGGGGAGCAGCTGACAGCCCTGCTGGCCTGGATTCGGGAG
CCCTGGGAAGAGTTGTTCTCCATTGGACTCCGGACAGTAACCCAGGAGGCTCTGGACCTGGACCGATGA

Translation (1072 aa):
MTTAPRDSVVWKLAGLLRESGDAVLSGCSTLSLLTATLQQLNRVFELYLGPWGPGQTGFVALPSHPADSP
VILQLQFLFDVLQKTLSLKLVHIPGVGLPGPIKIFPFKSLRQLELRGVPIHSLCGLRGIYSQLESLVCNR
SIQALEELLSACGGDLCSALPWLALLSADFSYNALRSLDSSLRLLSALRFLNLSHNHLQDCKGFLMDLCE
LYHLDISYNHLRLVPRVGPSGAALGTLILRANELRSLQGLEQLKNLRHLDVAYNLLEGHTELAPLWLLAE
LRKLYLEGNPLWFHPAHRAATAQYLSPRARDAAHGFLLDGKVLSLKDLQQTSDSSGLGPVIQPLSWPVGS
TTETSGGPELSDSLSSGGIVAQAPLRKVKSRVRVRRASISEPSDTDPELRTLDPSPAGWFVQQHRELELL
ASFRERFGCDWLQYRSHLETMGSSPLSTTKTPALSTPPLDVQNLETVCSPPAIEDDTKESPEKVSEEGRV
EPEPQEEEREEQDKEEGSREDLEEEEEQEQKAVEAELCRPMLVCPLQGLGGVQGKECFLRVTSAHLFEVE
LQAARTLERLELQSLVAAELESETETQGEPVSEGSGPFPGAPVLVLRFSYICPDRQLRRYAVLEPEAREA
VQELLAVLTPFTSVKEQQPGANKDPQGARFQCLRCSCEFKPEESRLGLESDEGWKPLFQNTESPVVCPNC
GSDHVVLLAVSGEVPNREQNQEEQSADSACDLADHGGCPSRPDGIPPQTSISHDRSSWSLSPSPGCSGFR
SVDHRLRLFLDVEVFSDSEEEFQCCIKVPVVLAGHTEEFPCLVVVSNHMLYLLKVLGAICGPPASWLQPT
LAIALQDLSGMELGLAGQSLRLEWAAGTGSCVLLPRDARQCRAFLEELTGVLQSLPRTQRNCISATEEEV
TPQHRLWPLLGKDPSAEVPQFFYLRAFLAEGSSTCPVSLLLTLSTLYLLDEDPGGSHAESPLPVVSDETS
EQPASLGPGPSLQVREQQPLSCLSSVQLYRTSPLDLRLIFYDEVSRLESFWALHVVCGEQLTALLAWIRE
PWEELFSIGLRTVTQEALDLDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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