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Report for CCDS20473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20473.1 Public Mus musculus 6 Adipor2 23 108 98 CCDS HistoryNCBI Gene:68465Re-query CCDS DB by CCDS ID:20473.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032272.12 ENSMUSP00000032272.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032272.12Link to Ensembl Protein Viewer:ENSMUSP00000032272.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032272Re-query CCDS DB by Protein ID:ENSMUSP00000032272
Original member Current member EBI ENSMUST00000169744.7 ENSMUSP00000126138.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169744.7Link to Ensembl Protein Viewer:ENSMUSP00000126138.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169744Re-query CCDS DB by Protein ID:ENSMUSP00000126138
Original member Current member NCBI NM_001355692.1 NP_001342621.1 Accepted alive Link to Nucleotide Sequence:NM_001355692.1Link to Protein Sequence:NP_001342621.1Re-query CCDS DB by Nucleotide ID:NM_001355692Re-query CCDS DB by Protein ID:NP_001342621Link to BLAST:NP_001342621.1
Original member Current member NCBI NM_197985.4 NP_932102.2 Accepted alive Link to Nucleotide Sequence:NM_197985.4Link to Protein Sequence:NP_932102.2Re-query CCDS DB by Nucleotide ID:NM_197985Re-query CCDS DB by Protein ID:NP_932102Link to BLAST:NP_932102.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342621.1 386 Q8BQS5-1 386 100% 0 0
NP_932102.2 386 Q8BQS5-1 386 100% 0 0

Chromosomal Locations for CCDS 20473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 119355800 119355928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119357216 119357409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119358922 119359109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119359351 119359537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119361828 119361999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119365261 119365380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119370150 119370320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGAACGAGCCAGCCAAACACCGATTGGGGTGCACCAGGACTCCAGAGCCAGATATACGGCTCAGAAAAG
GGCACCAACTTGATGATACAAGGGGAAGTAATAATGACAACTACCAAGGAGATTTGGAGCCCAGCTTAGA
GACACCTGTTTGTTCTTCCTATTATGAAAATAGCCCGGAGGAGCCCGAGTGTCATGATGACAATTCCCAG
GAAGATGAAGGGTTTATGGGCATGTCCCCGCTCCTACAGGCCCATCATGCTATGGAACGAATGGAAGAGT
TTGTTTGTAAGGTGTGGGAAGGCCGATGGCGAGTGATCCCTCACGATGTGCTACCGGATTGGCTTAAGGA
TAATGACTTCCTTCTCCATGGACACCGGCCTCCTATGCCTTCCTTTCGGGCCTGTTTTAAGAGCATTTTT
AGAATACACACAGAGACGGGCAACATTTGGACACATCTCCTAGGTTGTGTATTCTTCCTGTGCCTGGGGA
TCTTTTATATGTTTCGCCCAAATATATCTTTTGTGGCCCCTCTGCAAGAGAAAGTGGTCTTTGGCTTGTT
CTTCTTGGGAGCCATTCTCTGCCTTTCCTTTTCATGGCTCTTCCACACGGTGTACTGCCACTCAGAAGGG
GTCTCCCGACTCTTCTCTAAATTGGATTACTCTGGTATTGCTCTTCTGATCATGGGAAGTTTTGTTCCTT
GGCTTTATTATTCTTTCTACTGTAACCCACAACCTTGCTTCATCTACCTGATTGTCATCTGTGTGCTGGG
CATTGCAGCCATTATCGTCTCTCAGTGGGACATGTTTGCCACCCCTCAGTATCGGGGGGTCAGAGCAGGA
GTGTTCGTGGGCTTAGGCCTGAGTGGAATCATCCCTACCTTGCATTATGTCATCTCAGAAGGGTTCCTGA
AGGCTGCCACCATAGGGCAGATAGGCTGGCTAATGCTTATGGCTAGCCTCTATATCACCGGAGCTGCCCT
CTATGCGGCCCGTATCCCTGAGCGCTTCTTTCCTGGCAAATGTGACATCTGGTTTCACTCTCATCAGCTC
TTCCACATCTTTGTGGTTGCTGGTGCCTTTGTTCACTTCCACGGAGTCTCAAACCTGCAGGAATTTCGTT
TCATGATTGGCGGGGGCTGCACTGAAGAGGATGCACTGTGA

Translation (386 aa):
MNEPAKHRLGCTRTPEPDIRLRKGHQLDDTRGSNNDNYQGDLEPSLETPVCSSYYENSPEEPECHDDNSQ
EDEGFMGMSPLLQAHHAMERMEEFVCKVWEGRWRVIPHDVLPDWLKDNDFLLHGHRPPMPSFRACFKSIF
RIHTETGNIWTHLLGCVFFLCLGIFYMFRPNISFVAPLQEKVVFGLFFLGAILCLSFSWLFHTVYCHSEG
VSRLFSKLDYSGIALLIMGSFVPWLYYSFYCNPQPCFIYLIVICVLGIAAIIVSQWDMFATPQYRGVRAG
VFVGLGLSGIIPTLHYVISEGFLKAATIGQIGWLMLMASLYITGAALYAARIPERFFPGKCDIWFHSHQL
FHIFVVAGAFVHFHGVSNLQEFRFMIGGGCTEEDAL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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