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Report for CCDS37849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37849.1 Public Mus musculus 18 Spire1 23 108 98 CCDS HistoryNCBI Gene:68166Re-query CCDS DB by CCDS ID:37849.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224799.1 ENSMUSP00000153492.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224799.1Link to Ensembl Protein Viewer:ENSMUSP00000153492.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224799Re-query CCDS DB by Protein ID:ENSMUSP00000153492
Original member Current member NCBI NM_176832.2 NP_789802.1 Accepted alive Link to Nucleotide Sequence:NM_176832.2Link to Protein Sequence:NP_789802.1Re-query CCDS DB by Nucleotide ID:NM_176832Re-query CCDS DB by Protein ID:NP_789802Link to BLAST:NP_789802.1

Chromosomal Locations for CCDS 37849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67491291 67491549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67495140 67495276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67495363 67495390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67496562 67496632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67497177 67497314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67503431 67503573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67505651 67505744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67506554 67506726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67519291 67519420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67519804 67519890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67528864 67529028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67530407 67530484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67545615 67545659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGAACTGCATACATTTCTGACCAAAATTAAGAGTGCAAAGGAGAACCTTAAGAAGATTCAAGAAATGG
AAAAGGGTGATGAATCTAGCACAGATCTGGAGGACCTGAAAAATGCAGACTGGGCCCGGTTCTGGGTACA
AGTGATGAGGGATTTGCGAAATGGGGTAAAACTTAAGAAAGTCCAGCAGCGGCAGTACAACCCTCTGCCC
ATTGAGTACCAACTGACCCCTTATGAGATGCTCATGGACGACATTCGGTGCAAAAGATACACCTTGAGAA
AAGTAATGGTAAATGGTGACGTCCCCCCTCGGTTGAAAAAGAGTGCTCATGAGGTCATCCTTGACTTTAT
CAGATCAAGACCCCCTTTAAATCCAGTTTCAGCCAGAAAACTGAAACCAACCCCACCACGGCCACGGAGC
CTCCATGAAAGAATATTAGAAGAAATTAAAGCAGAAAGAAAGCTTCGACCTGTGTCACCAGAAGAAATTA
GACGGAGCAGACTAGATGTCACTACGCCAGAATCTCCAAAGAATGTTGGAGAATCATCTATGGTGAATGG
AGGCTTAACATCTCAAACAAAAGAAAATGGGCTGAGCGCTGCCCAGCAGGGGTCTGCGCAGAGGAAGAGG
CTCCTCAAAGCCCCAACCCTGGCTGAACTGGACAGCTCTGACTCTGAGGAGGAAAAAAGTCTGCACAAGT
CAACCAGCAGCAGCAGTGCGTCTCCCTCCCTCTATGAGGATCCAGTACTGGAGGCCATGTGCTCCAGGAA
GAAGCCTCCAAAATTCTTGCCCATCTCATCAACACCCCAGCCAGAGAGAAGGCAGCCACCGCAGAGGCGC
CACTCCATTGAGAAGGAAACACCTACGAACGTGAGGCAGTTTCTGCCACCATCCAGGCAGAGCTCACGGT
CTCTTGAGGAATTCTGCTACCCAGTGGAGTGCCTCGCTCTCACTGTGGAGGAAGTGATGCACATCCGTCA
GGTCCTGGTGAAAGCAGAGCTGGAAAAGTACCAACAGTATAAGGATGTCTACACTGCCCTGAAAAAAGGA
AAGCTCTGCTTCTGTTGCCGAACCCGGAGGTTTTCCTTCTTCACCTGGTCTTACACCTGTCAGTTCTGTA
AGAGGCCCGTGTGCTCACAGTGTTGCAAAAAGATGCGGCTGCCTTCCAAGCCATACTCTACTCTACCTAT
CTTCTCTTTGGGACCTTCTGCCTTGCAAAGGGGGGAAAGCTGTTCGAGGTCAGAAAAACCCTCCACTAGT
CACCATCGGCCTCTTCGAAGTATTGCCAGGTTCTCCACAAAATCCAGGTCTGTGGACAAGTCCGATGAGG
AGCTCCAGTTTCCCAAAGAGCTCATGGAGGACTGGAGCACGATGGAGGTGTGTGTGGACTGCAAAAAGTT
CATCTCCGAGATCATCAGCTCAAGCCGGCGCAGCCTGGTGCTGGCTAACAAAAGAGCCAGGTTGAAAAGG
AAGACACAGTCTTTCTACATGTCCTCGGCGGGCCCCTCGGAGTACTGCCCTTCAGAACGGACTATCAACG
AGATCTGA

Translation (515 aa):
MELHTFLTKIKSAKENLKKIQEMEKGDESSTDLEDLKNADWARFWVQVMRDLRNGVKLKKVQQRQYNPLP
IEYQLTPYEMLMDDIRCKRYTLRKVMVNGDVPPRLKKSAHEVILDFIRSRPPLNPVSARKLKPTPPRPRS
LHERILEEIKAERKLRPVSPEEIRRSRLDVTTPESPKNVGESSMVNGGLTSQTKENGLSAAQQGSAQRKR
LLKAPTLAELDSSDSEEEKSLHKSTSSSSASPSLYEDPVLEAMCSRKKPPKFLPISSTPQPERRQPPQRR
HSIEKETPTNVRQFLPPSRQSSRSLEEFCYPVECLALTVEEVMHIRQVLVKAELEKYQQYKDVYTALKKG
KLCFCCRTRRFSFFTWSYTCQFCKRPVCSQCCKKMRLPSKPYSTLPIFSLGPSALQRGESCSRSEKPSTS
HHRPLRSIARFSTKSRSVDKSDEELQFPKELMEDWSTMEVCVDCKKFISEIISSSRRSLVLANKRARLKR
KTQSFYMSSAGPSEYCPSERTINEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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