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Report for CCDS16602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16602.1 Public Mus musculus 2 Ino80 23 108 98 CCDS HistoryNCBI Gene:68142Re-query CCDS DB by CCDS ID:16602.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049920.13 ENSMUSP00000051845.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049920.13Link to Ensembl Protein Viewer:ENSMUSP00000051845.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049920Re-query CCDS DB by Protein ID:ENSMUSP00000051845
Original member Current member NCBI NM_026574.4 NP_080850.2 Accepted alive Link to Nucleotide Sequence:NM_026574.4Link to Protein Sequence:NP_080850.2Re-query CCDS DB by Nucleotide ID:NM_026574Re-query CCDS DB by Protein ID:NP_080850Link to BLAST:NP_080850.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080850.2 1559 Q6ZPV2-1 1559 100% 0 0

Chromosomal Locations for CCDS 16602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119374364 119374581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119377347 119377562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119379563 119379722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119379966 119380121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119381910 119381998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119382864 119382966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119383350 119383508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119392853 119392925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119402330 119402424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119406816 119406943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119412402 119412627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119418321 119418461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119423605 119423776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119425259 119425352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119425705 119425772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119426589 119426722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119426900 119427067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119428477 119428562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119430988 119431105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119431928 119432012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119433191 119433333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119434149 119434208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119439375 119439470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119441613 119441693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119442383 119442592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119444447 119444514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119445461 119445656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119446856 119447059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119448205 119448258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119450003 119450217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119451330 119451450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119454056 119454217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119456385 119456452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119456572 119456741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119458081 119458223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4680 nt):
ATGGCCTCGGAGTTGGGTGCCGGGGACGATGGCAGCAGCACTGAGCTGGCAAAGCCCCTTTATCTTCAGT
ACCTGGAGAGAGCCTTGCGGTTGGACCACTTTCTGCGACAAACATCAGCCATCTTCAACAGGAATATTTC
TAGTGATGACAGTGAAGATGGACTGGATGACAATAATCCCTTATTGCCTGAGTCTGGGGATCCCTTAATA
CAAGTAAAAGAAGAGCCTCCAAATTCATTGCTTGGCGAAACCTCTGGAGCAAGCAGTTCTGGGTTGTTGA
ACCCATATTCACTGAACGGCGTTCTGCAGTCAGAATCAAAATCTGACAAGGGGAATTTATATAACTTCTC
TAAGTTGAAGAAAAGCAGAAAGTGGCTAAAGAGCATTCTTTTAAGTGATGAGTCCAGTGAGGCAGATTCT
CAGAGTGAAGACAATGATGATGAAGAAGAAGAACTCAGTCTCAGCAGAGAAGAACTTCACAACATGCTTC
GATTACACAAATATAAGAAACTTCACCAAAATAAATATAGTAAAGATAAGGAGTTGCAGCAGTACCAGTA
CTACAGTGCAGGCCTGCTCTCTACATACGACCCTTTCTATGAGCAACAGCGCCACTTGCTTGGACCCAAA
AAGAAGAAATTCAAGGAAGACAAGAAGCTTAAAGCCAAGTTGAAAAAAGTGAAGAAAAAAAGAAGACGTG
ATGAAGAGTTTTCCTCTGAAGAATCTCCACGTCACCACCATCACCAGACCAAAGTCTTTGCTAAGTTTTC
TCATGATGCACCTCCCCCTGGCACCAAGAAGAAACACTTATCCATTGAGCAGCTTAATGCCCGCCGCAGG
AAAGTGTGGCTGAGCATCGTGAAAAAGGAACTACCAAAGGCCAACAAGCAGAAGTCTTCAGCTCGAAACT
TATTTCTTACCAATAGCCGAAAGCTTGCCCATCAATGCATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGC
ACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGATGCTTCTGTACTGGAAG
AAGTATGAGAAGGTGGAGAAGGAGCACCGCAAGCGAGCAGAGAAGGAAGCTCTGGAGCAGCGCAAGTTGG
ATGAGGAAATGCGGGAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTA
TGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTA
GAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACT
ATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCG
AACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGC
TCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCA
CTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACA
GGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCC
CATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATT
GGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAG
AAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATC
ACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGG
ATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAA
TCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTCTGGGCTCTGCTACATTTCATT
ATGCCAACATTATTTGATTCGCATGAAGAATTTAATGAATGGTTTTCCAAAGACATTGAAAGTCATGCTG
AAAACAAATCTGCTATTGATGAGAATCAACTCTCTCGTTTACACATGATCTTGAAACCATTTATGCTGAG
AAGAATCAAAAAAGATGTAGAAAATGAATTGTCTGACAAGATTGAGATTCTAACGTACTGCCAATTGACC
AGTCGACAAAAACTCTTATATCAGGCACTAAAGAATAAAATTTCCATTGAGGACTTACTGCAGTCTTCAA
TGGGCTCCACACAACAAGCACAGAACACCACCAGCAGCCTCATGAATTTAGTCATGCAATTCAGGAAGGT
GTGTAATCACCCAGAGTTATTCGAACGGCAAGAAACGTGGTCTCCATTTCATATTTCTCTAAAGCCATAT
GAAATTTCGAAGTTTATTTATCGTCATGGACAGATCAGGGTCTTCAACCACTCACGAGATAGGTGGTTGA
AGGTTCTTCTCTCTCCGTTTGCACCAGATTATATCCAGCAGTCTCTCTTCCATAGGAAAGGTATTAATGA
AGGAAGCTGTTTTTCTTTCCTTCGATTTATTGATGTCTCGCCAGCAGAAATGGCAAACCTCATGCTTCAG
GGACTTTTGGCCAGGTGGTTAGCTCTTTTCCTATCTCTGAAAGCCTCCTACAGGCTCCACCAGCTGCGCT
CTTGGGCAGAGCCGGATGGGACAAGCCATCAGAGCTATCTGAGAAACAAGGATTTTCTTCTCGGAGTTGA
TTTCCCACTTTCCTTCCCTAACCTTTGCAGCTGCCCTTTGTTAAAGTCTCTTGTTTTCAGCAGCCACTGT
AAAGCAGTGAGTGGCTACTCAGACCATGTTGTCCATCAGCGGAGATCAGCTACCTCCTCACTTCGTTGCT
GCCTCCTCACTGAGCTGCCGTCTTTTTTGTGTGTGGCCAGTCCACGAGTCACCGCAGTGCCGTTGGATTC
TTACTGTAATGACAGAAGTGCAGAGTATGAGAGAGGAGTTCTGAAGGAAGGAGGGAGTCTGGCTGCCAAG
CAGTGTTTGTTGAATGGGGCTCCTGAGCTGGCTACGGATTGGCTGAGTCGCAGATCCCAGTTCTTCCCAG
AGCCAGCTGGAGGGCTGCTGAGCATTAGACCCCAGAACGGCTGGTCTTTCATCAGAATTCCAGGCAAGGA
GAGCCTCATCACTGACAGTGGAAAGCTGTATGCCCTTGATGTCCTGTTGACTCGGCTCAAGTCTCAAGGA
CATAGGGTCCTTATCTACTCTCAGATGACCAGAATGATAGACCTGCTGGAGGAATATATGGTATACAGGA
AGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCA
GACCAGGAACGACATCTTTGTGTTTCTGTTAAGCACGCGAGCTGGAGGACTGGGTATCAATCTCACAGCT
GCAGACACAGTGATTTTCTACGACAGTGACTGGAACCCCACTGTAGACCAGCAGGCCATGGATAGGGCCC
ACCGCTTGGGGCAAACAAAACAGGTCACTGTGTACCGGCTTATCTGTAAAGGCACAATTGAGGAGCGTAT
TCTGCAGAGAGCCAAGGAAAAGAGTGAGATTCAGCGCATGGTGATTTCTGGTGGGAACTTCAAACCAGAT
ACCTTGAAACCCAAAGAGGTGGTTAGCCTTCTTCTAGATGACGAAGAACTGGAAAAGAAACTGAGACTGC
GGCAGGAAGAGAAACGGCAGCAGGAGGAAAGCAACCGAGTGAAAGAACGCAAACGCAAGCGGGAGAAGTA
CGCAGAAAAGAAGAAAAAGGAAGATGAGTTGGATGGGAAGAGGAGGAAAGAGGGTGTGAACCTCGTGATC
CCGTTTGTTCCCTCTGCTGACAACTCCAACCTCTCCGCTGATGGGGATGATTCCTTCATCAGTGTCGACT
CAGCCATGCCCAGCCCTTTCAGTGAGATCTCAATCAGCAGTGAACTGCACACTGGCTCTATTCCCCCTGA
TGAGAGCAGCAGTGACATGTTAGTCATCGTGGATGACCCAGCCTCCTCAGCACCTCAGTCGAGAGCCACC
AACTCTCCTGCTTCCATAACAGGCTCTGTGTCAGACACTGTGAATGGAATTTCCATTCAGGAAGTGCCAG
CTGCAGGACGTGGTCACTCAGCTCGAAGCCGAGGCCGCCCCAAGGGTTCAGGAAGCACAGCCAAAGGAGC
AGGCAAAGGCCGAAGCCGCAAGTCCACTGCAGGCAGTGCTGCTGCGATGGCAGGAGCCAAAGCAGGGGCT
GCAGCAGCTTCTGCAGCTGCTTATGCTGCATACGGGTACAATGTGTCTAAAGGAATCTCCGCAAGCAGTC
CTCTGCAGACATCCATTGTCCGACCTGCTGGCCTTGCAGACTTTGGACCTTCAAGCGCCTCTTCTCCCTT
AAGTTCCCCTCTGAACAAAGGAAATAATATTCCTGGGACTCCTAAAAGCCTCCACATGACCAGCAGCCTA
GCCTCAGACTCCTTGATCCGGAAACAGGGCAAAGGCACCAACCCCTCTGGAGGACGGTAA

Translation (1559 aa):
MASELGAGDDGSSTELAKPLYLQYLERALRLDHFLRQTSAIFNRNISSDDSEDGLDDNNPLLPESGDPLI
QVKEEPPNSLLGETSGASSSGLLNPYSLNGVLQSESKSDKGNLYNFSKLKKSRKWLKSILLSDESSEADS
QSEDNDDEEEELSLSREELHNMLRLHKYKKLHQNKYSKDKELQQYQYYSAGLLSTYDPFYEQQRHLLGPK
KKKFKEDKKLKAKLKKVKKKRRRDEEFSSEESPRHHHHQTKVFAKFSHDAPPPGTKKKHLSIEQLNARRR
KVWLSIVKKELPKANKQKSSARNLFLTNSRKLAHQCMKEVRRAALQAQKNCKETLPRARRLTKEMLLYWK
KYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKL
EDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSG
SGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLA
HLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI
TSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI
MPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLT
SRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPY
EISKFIYRHGQIRVFNHSRDRWLKVLLSPFAPDYIQQSLFHRKGINEGSCFSFLRFIDVSPAEMANLMLQ
GLLARWLALFLSLKASYRLHQLRSWAEPDGTSHQSYLRNKDFLLGVDFPLSFPNLCSCPLLKSLVFSSHC
KAVSGYSDHVVHQRRSATSSLRCCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERGVLKEGGSLAAK
QCLLNGAPELATDWLSRRSQFFPEPAGGLLSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQG
HRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTA
ADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPD
TLKPKEVVSLLLDDEELEKKLRLRQEEKRQQEESNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVI
PFVPSADNSNLSADGDDSFISVDSAMPSPFSEISISSELHTGSIPPDESSSDMLVIVDDPASSAPQSRAT
NSPASITGSVSDTVNGISIQEVPAAGRGHSARSRGRPKGSGSTAKGAGKGRSRKSTAGSAAAMAGAKAGA
AAASAAAYAAYGYNVSKGISASSPLQTSIVRPAGLADFGPSSASSPLSSPLNKGNNIPGTPKSLHMTSSL
ASDSLIRKQGKGTNPSGGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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