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Report for CCDS27914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27914.1 Public Mus musculus 16 Trap1 23 108 98 CCDS HistoryNCBI Gene:68015Re-query CCDS DB by CCDS ID:27914.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006137.8 ENSMUSP00000006137.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006137.8Link to Ensembl Protein Viewer:ENSMUSP00000006137.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000006137Re-query CCDS DB by Protein ID:ENSMUSP00000006137
Original member Current member NCBI NM_026508.2 NP_080784.1 Accepted alive Link to Nucleotide Sequence:NM_026508.2Link to Protein Sequence:NP_080784.1Re-query CCDS DB by Nucleotide ID:NM_026508Re-query CCDS DB by Protein ID:NP_080784Link to BLAST:NP_080784.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080784.1 706 Q9CQN1 706 100% 0 0

Chromosomal Locations for CCDS 27914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4040123 4040224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4040359 4040431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4043953 4044098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4044613 4044698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4045443 4045581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4045880 4046065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4049351 4049498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4052865 4052934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4053481 4053601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4054754 4054909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4055797 4055870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4056330 4056439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4060757 4060917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4062330 4062401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4065233 4065373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4068256 4068338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4068857 4069021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4077693 4077780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGCGTGCGAGCTGCGAGCTGTGTTGCTGTGGGGCCGCGGGCTGCAGACTGTACTGCGGGCCCCCGCGC
TGGCTGGAGTTCGGCGAGGAAAGCCAGTTCTGCACCTTCAGAAGACTACAGTCCAGTTTAGGGGCCCCAC
ACAAAGTCTGGCTTCAGGGATCTCTGCAGGACAGTTATACAGCACACAGGCAGCCGAGGACAAGGAGGAG
GAGAGCCTGCACTCCATCATCAGCAACACTGAGGCAGTGCGGGGTTCTGTCTCCAAACATGAGTTCCAGG
CAGAGACAAAGAAACTTTTGGACATCGTAGCCCGTTCTCTGTACTCAGAAAAAGAGGTGTTCATACGAGA
GCTCATCTCCAATGCCAGTGATGCCTTGGAGAAACTGCGGCACAAGCTGGTGTGTGAAGGCCAGGTGCTG
CCAGAAATGGAGATTCACCTTCAGACGGATGCCAAGAAGGGCACTATTACCATTCAGGACACTGGCATTG
GGATGACACAGGAGGAGCTGGTGTCCAACCTTGGCACAATTGCCAGATCGGGGTCAAAGGCCTTCCTGGA
AGCACTGCAGAACCAGGCAGAGACCAGCAGCAAGATCATTGGTCAGTTTGGAGTGGGTTTCTATTCAGCC
TTCATGGTAGCTGACAAGGTTGAAGTCTATTCTCGATCAGCAGCTCCAGAGAGCCCAGGTTACCAGTGGC
TTTCAGATGGTTCTGGAGTGTTTGAAATTGCCGAAGCTTCAGGAGTTAGACCTGGGACCAAAATAATCAT
CCACCTCAAGTCAGACTGTAAAGATTTTGCCAGCGAGTCCCGGGTACAAGATGTGGTAACAAAGTACAGT
AACTTTGTCAGCTTCCCCTTGTACCTTAATGGAAAGCGGATTAACACTTTGCAGGCCATCTGGATGATGG
ACCCAAAGGACATCAGTGAATTTCAGCATGAGGAATTCTACCGTTATATTGCTCAGGCTTATGATAAGCC
CCGCTTCACTTTGCACTACAAGACGGACGCACCACTCAACATCCGCAGCATCTTCTATGTGCCAGAGATG
AAACCATCCATGTTTGATGTGAGCAGGGAGCTGGGCTCCAGCGTGGCACTGTATAGCCGCAAGGTCCTCA
TCCAGACCAAGGCTGCAGACATCCTGCCCAAGTGGCTGCGCTTCATTCGAGGTGTGGTGGATAGTGAGGA
CATTCCCCTGAACCTCAGCAGAGAGCTCCTGCAGGAGAGTGCGCTCATCCGGAAACTCCGGGATGTTCTA
CAACAGAGATTGATCAAGTTCTTCATTGACCAGAGTAAAAAAGATGCTGAAAAATACGCAAAGTTTTTTG
AAGATTATGGCTTGTTCATGAGGGAGGGCATTGTGACCACTGCAGAGCAAGACATCAAGGAGGATATTGC
AAAACTGCTACGGTATGAGTCCTCAGCCCTGCCTGCTGGGCAGCTGACCAGCTTACCAGACTATGCCAGC
CGAATGCAGGCTGGCACCCGCAACATCTATTACCTGTGTGCCCCTAACCGTCACCTGGCTGAACATTCAC
CCTATTACGAAGCCATGAAGCAGAAACATACTGAGGTGCTCTTCTGCTATGAGCAGTTCGATGAGCTTAC
TCTGCTGCACCTGAGGGAGTTTGACAAGAAGAAGCTCATCTCTGTGGAAACAGACATCGTCGTTGATCAC
TACAAGGAGGAAAAGTTTGAGGACACATCTCCAGCTGATGAGCGCCTCTCGGAGAAGGAAACAGAAGATC
TAATGGCGTGGATGAGAAATGCACTAGGGTCCCGTGTCACCAATGTGAAGGTGACTTTCCGCCTAGACAC
CCACCCTGCCATGGTGACCGTGCTGGAGATGGGGGCTGCTCGGCATTTCTTGCGTATGCAGCAGCTGGCC
AAGACCCAGGAGGAACGTGCCCAACTGCTACAGCCCACACTGGAGATCAACCCCAGGCACACACTGATAA
AGAAGCTCTGCCAGCTGAGGGAGAGCGAGCCGGAGCTGGCCCAGCTGCTCGTGGATCAGATCTATGAGAA
TGCCATGATAGCAGCAGGACTCGTTGATGACCCCCGGGCCATGGTCGGCCGCCTGAACGACCTTTTGGTC
AAGGTCCTGGAGAAACACTGA

Translation (706 aa):
MACELRAVLLWGRGLQTVLRAPALAGVRRGKPVLHLQKTTVQFRGPTQSLASGISAGQLYSTQAAEDKEE
ESLHSIISNTEAVRGSVSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVCEGQVL
PEMEIHLQTDAKKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLEALQNQAETSSKIIGQFGVGFYSA
FMVADKVEVYSRSAAPESPGYQWLSDGSGVFEIAEASGVRPGTKIIIHLKSDCKDFASESRVQDVVTKYS
NFVSFPLYLNGKRINTLQAIWMMDPKDISEFQHEEFYRYIAQAYDKPRFTLHYKTDAPLNIRSIFYVPEM
KPSMFDVSRELGSSVALYSRKVLIQTKAADILPKWLRFIRGVVDSEDIPLNLSRELLQESALIRKLRDVL
QQRLIKFFIDQSKKDAEKYAKFFEDYGLFMREGIVTTAEQDIKEDIAKLLRYESSALPAGQLTSLPDYAS
RMQAGTRNIYYLCAPNRHLAEHSPYYEAMKQKHTEVLFCYEQFDELTLLHLREFDKKKLISVETDIVVDH
YKEEKFEDTSPADERLSEKETEDLMAWMRNALGSRVTNVKVTFRLDTHPAMVTVLEMGAARHFLRMQQLA
KTQEERAQLLQPTLEINPRHTLIKKLCQLRESEPELAQLLVDQIYENAMIAAGLVDDPRAMVGRLNDLLV
KVLEKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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