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Report for CCDS19011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19011.1 Public Mus musculus 4 Tprg1l 23 108 98 CCDS HistoryNCBI Gene:67808Re-query CCDS DB by CCDS ID:19011.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19011.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030896.14 ENSMUSP00000030896.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030896.14Link to Ensembl Protein Viewer:ENSMUSP00000030896.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030896Re-query CCDS DB by Protein ID:ENSMUSP00000030896
Original member Current member NCBI NM_026388.2 NP_080664.1 Accepted alive Link to Nucleotide Sequence:NM_026388.2Link to Protein Sequence:NP_080664.1Re-query CCDS DB by Nucleotide ID:NM_026388Re-query CCDS DB by Protein ID:NP_080664Link to BLAST:NP_080664.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080664.1 266 Q9DBS2 266 100% 0 0

Chromosomal Locations for CCDS 19011.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154158371 154158565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154159269 154159422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154160085 154160261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154160355 154160629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGCTGCAGCTGCGGGACACGGTGGACTCGGCGGGCACGAGCCCCACGGCGGTGCTGGCGGCCGGCGAGG
ACGCGGGTGCGGGCCGGCCTGGGGCGGGCACACCGCTGCGCCAGACGTTGTGGCCGCTGAACGTCCACGA
CCCTACACGCCGCGCCCGCGTCAAGGAGTACTTCGTGTTCCGGCCCGGCACCATCGAGCAGGCGGTCGAG
GAGATCCGCGCCGTGGTACGGCCCGTGGAGGACGGCGAGATCCAGGGGGTGTGGCTGCTGACCGAGGTGG
ACCACTGGAACAACGAGAAGGAGCGGCTGGTGCTGGTCACCGACCAGTCGCTGCTCATCTGCAAATATGA
CTTCATCAGCCTTCAGTGCCAGCAGGTGGTCAGGGTGGCGCTCAGCGCGGTAGACACCATCTCCTGTGGA
GAATTCCAGTTTCCTCCGAAGTCGCTCAACAAGAGAGAAGGCTTTGGGGTTCGCATTCAGTGGGACAAGC
AGAGCCGCCCTTCCTTCATCAACAGATGGAACCCCTGGTCTACAAACATGCCCTATGCCACCTTCATAGA
ACACCCAATGGCTGGCATGGACGAGAAGACAGCGTCTCTGTGCCATTTGGAAAGCTTCAAGGCTCTCCTG
ATCCAAGCTGTCAAGAAGGCCCAGAAGGAGAGCCCACTGCCAGGGCAGGCGAATACCGTGCTGGTGCTGG
AGCGCCCCCTCCTCATCGAGACCTACGTGGGGCTCATGTCCTTCATCAACAATGAAGCCAAGCTGGGCTA
CTCCATGACCAGGGGCAAGATAGGCTTCTAG

Translation (266 aa):
MLQLRDTVDSAGTSPTAVLAAGEDAGAGRPGAGTPLRQTLWPLNVHDPTRRARVKEYFVFRPGTIEQAVE
EIRAVVRPVEDGEIQGVWLLTEVDHWNNEKERLVLVTDQSLLICKYDFISLQCQQVVRVALSAVDTISCG
EFQFPPKSLNKREGFGVRIQWDKQSRPSFINRWNPWSTNMPYATFIEHPMAGMDEKTASLCHLESFKALL
IQAVKKAQKESPLPGQANTVLVLERPLLIETYVGLMSFINNEAKLGYSMTRGKIGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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