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Report for CCDS36473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36473.1 Public Mus musculus 12 Pcnx4 23 108 98 CCDS HistoryNCBI Gene:67708Re-query CCDS DB by CCDS ID:36473.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044352.7 ENSMUSP00000038916.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044352.7Link to Ensembl Protein Viewer:ENSMUSP00000038916.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044352Re-query CCDS DB by Protein ID:ENSMUSP00000038916
Original member NCBI NM_026327.3 NP_080603.2 Updated not alive Link to Nucleotide Sequence:NM_026327.3Link to Protein Sequence:NP_080603.2Re-query CCDS DB by Nucleotide ID:NM_026327Re-query CCDS DB by Protein ID:NP_080603
Current member NCBI NM_026327.4 NP_080603.2 Accepted alive Link to Nucleotide Sequence:NM_026327.4Link to Protein Sequence:NP_080603.2Re-query CCDS DB by Nucleotide ID:NM_026327Re-query CCDS DB by Protein ID:NP_080603Link to BLAST:NP_080603.2

Chromosomal Locations for CCDS 36473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 72541420 72542117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72555437 72555616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72555844 72556358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72556583 72556683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72556801 72556920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72566897 72567260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72569718 72569821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72573490 72574502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72575354 72575540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 72579304 72579555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3534 nt):
ATGGGAAGTATGAGTTCAGATGTCCCTCTGCTAAATGATTACAAACAGGACTTCCTGCTGAAGCGCTTTC
CACAGACTGTTCTTGGAGGCCCTCGACTCAAACTAGGCTACTGTGCCCCTCCTTACATATATGTTAATCA
GATTGTCCTTTTCCTGATGCCATGGGCCTTAGGTGGAACGGGAACGCTTCTATACCAACTGGATATCCTG
AGAGACTATACTGCAGCCGCGCTTTCAGGAGGACTAATGGTGTTCACTGCGGCTGTCATCCAGCTCATAA
GCGTGTACGCCAGGAGCAAGTCGGTGGTGGTCAGGAGGATGCGAACCAGGGATATCTTAGCAGAGGAAGA
CCAGCACGAATTTACAAGTTGTGCTGGTGCTGAGACCGTCAAATTTCTGATTCCTGGCAAAAAATATGTA
GCCAATACAGTTTTTCATTCTGTTCTTGCTGGGCTAGTGTGTGGTCTTGGAACATGGTATTTGCTCCCAA
ACCGAGTAACCTTGCTGTATGGCAGCCCTGGGGCGACTGCTGTGCTCTTTGTGTTTGGGTGGATAACACT
TTGCATAGGAGAATACTCACTCATTGTAAACACCGCCACAGAGACAGCAACATTCCAGACCCAGGATACT
TACGAAATCACTCCTCTCATGAGACCACTTTATATTTTTTTCTTTGTTTCTGTGGACCTTGCACACAGGT
TTATTGTAAATATTCCAGCTCTAGAGCAAATGAATCAGATTTTGCACATCTTGTTTGTGTTACTGCCCTT
CCTGTGGGCACTTGGGACTCTGCCCCCACCTGACGCCCTTCTCTTTTGGGCAGTGGAGCAGGTTTTAGAG
TTTGGTCTTGGGGGTTCATCCATGTCCACTCACCTACGGTTATTGGTCATGTTCATCGTTTCTGCTGGAG
CAGCAGTCGTGTCGTACTTCATTCCCAGCACCGTCGGAGTGGTTCTCTTCATGACTGGACTCGGGTTCTT
ACTGAGTCTTAACCCAAGTGACGTGAGCATGGTCTTCCGGTACGGTGTGACCAGGCACAGGGTAGGAAGC
AGTCATGAGGCTCGCCCAGGCAATTCAGGCCATTGGTTCCCGTGGAAGGAGTGCTTTCTGTTCATCGCTG
TGCTGGGCATGGCTCTCCTGGAGGCTGGGCTGCTGCATCACTATGTCAGCGTCCCACAGGTCTCCAGAAG
CGGCGCTCAGGCTGTCGTGGGCTATGTCCTGATGGTGTTACTTTCAATAGTGTGGATACTGAGAGAAACT
CAAAGCATCTACATCTTTGGGATTTTCCGAAACCCTTTCTATCCGAAGGATATACACGCTGTGTCTGTAT
TCTATGACAAGCAAAACAAGCTCCTGAAGATTGGTGCTGTCAGATGGATTTTGCTAACTCTAGTGTCCCC
TTTGGCAATGGTGGCCTTCCTTGCGCTGGACAGCTCCTTACACGGGCTCCACTCTGTGTCTGTCTCCATT
GGATTCACCAGGGCTTTCAGAATGGTGTGGCAGAATACAGAAACTGCTTTACTGGAGACTGTGGTTGTAT
CAGCAGTGCACATGGTGTCCAGCACAGACTGCTGGTGGAACAGGAGCCTTGATACAGGAATCAGGCTGTT
ATTGATCGGTATCATGCGAGACCGTTTGATTCAGTTCATCACTAAGTTGCAGTTTGCTGTGACTGTACTT
TTGGCATTGTGGACAGAAAAAAAACAGCATAGGAAAACAACAACGACTTTGTGTGTCCTCAACACTGTAT
TCGCTCCCTTCGTGCTGGGTATTATAGTTCTTTCAACACTACTGTCATCTCCTCTACTGCCCCTCTTCAC
ACTTCCTGTTTTCTTGGTGGGGTTTCCTCGTCCAGTTCAGAGCTGGCCAGGAGCAGTGGGCACTGCAGCC
TGTGTGTGCACCGACAGTGTGTTCTACCACCAGATGGTCCCCAGGCTGACTGCGGCACTGCAGACCGCCA
TGGCGGCGGGAAGTTTAGGTCTCCTCCTACCTGGCTCTCATTACTTGGGCCGTTTTGAGGATCGTTTAAT
ATGGATAATGATTCTAGAGTGTGGCTATACTTATTGCTGCATTAATGTTAAGGGGTTAGAACTGCAGGAA
ACATCCTGCCACACTGCTGAAGCCCAGAGAGTTGATGAAGTGTTTGAAAGTGCTTTTCAGCGAGAACACC
CACAAGTGTGCTCCCTTAATGAGCACCTGGAGAATGTCTTGACGCCATGTACAGTTTTGCCTGTGAAACT
GTATTCTGATGCCAGGAATGTGCTGACTGGCATAATTGATTCTCCTGACAACCTGAAGGAATTTAAAGAT
GATCTTATTAAGGTACTTGTGTGGGTGCTTATTCAGCACTGCTCTAAAAGGCCCAGCACGCAGGAGAATA
AAACTGAAAATACGGGAGAAGCCTCACCAGCACTGCCACCGGCTGCGAACAGCTCACCATGCCCCGAGTC
CCTGGAAGACTCTGAAAGTGCAAATTCAGACTGGTCTGATGGTAGTATTTTTGATGATGAACCAGCTATC
AAAAACAGAAAAGAAAAACTTCAGTCCAAAGATCTACCTTGTACAAAGTTACCTATTCCAGGGTCCGTAG
ATTCTCAGAATCCAGATGACCATTCTGCAGGCACAGGTCCCAAAAATGATCTTTACAGGACGGTTATATT
GGGACTCCCTGCTGTTGACAAGGGACAGCGAGAAGATGTGGCATATATTCCTCTCGTGGAGTTTAGTTGT
TCCCAGTCTCGCTTGCTAAGTTTACCTGAGGAATGGAGGTCTAACTCCACACCCCGTTCCAAGATCCTAG
AGATGAGCGCCTTGTTTCCAGAAGACTGGTACCAATTTGTTTTAAGGCAATTAGAATGCTTTCACTCGGA
AGAGAAGTCACGTGTTCTAGAGGAAATTGCAAAGGATAAAGCTTTAAAAGACTTGTATGTCCATACAGTG
ATGGCTTGTTATATTGGTTTATTTGGAATAGACAATGGAGTGCCTAGCCCTGGTCAGCTAGTAAGAGTCT
ACAATGGTGGCTTACCCTGGGCTGGCACCTTGGATTGGCTCTCAGAAAAACCAGAGCTGTTCCACCTAGT
TCGGAAAGCATTCAGGTATACACTGAAACTAATGGTTGATAAAGCAAGTTTGGGTCCAATAGAAGACTTT
AAAGAACTGACCAACTGCCTCAGAGAGTACGAGAGAGACTGGTACATTGGCTTAGTGTCTGAAGAGCAGT
GGAAGAGAGCAATTCTAGAAGAAAAGCCATGCTTGTTCTGCCTGGGGTATGAGTCTAGTATGGGCGTTTA
CACCTCGAGGGTGCTGATGCTTCAGGAGATGTCGGTGCACATCGGGAAGCTGAACGCTGAGGCCGTTCGA
GGTCAGTGGGCCAACCTCTCGTGGGAACTGCTTTATGCCACCAACGATGATGAGGAACGGTACAGCATCC
AGGCTCACCCACTGCTGCTGAGGAACCTCACTGTACAAGCCGCTGACCCTCCCTTGGGATACCCAATTTT
CTCTTCAAAACCTCTCCCTATACATCTGTGTTAG

Translation (1177 aa):
MGSMSSDVPLLNDYKQDFLLKRFPQTVLGGPRLKLGYCAPPYIYVNQIVLFLMPWALGGTGTLLYQLDIL
RDYTAAALSGGLMVFTAAVIQLISVYARSKSVVVRRMRTRDILAEEDQHEFTSCAGAETVKFLIPGKKYV
ANTVFHSVLAGLVCGLGTWYLLPNRVTLLYGSPGATAVLFVFGWITLCIGEYSLIVNTATETATFQTQDT
YEITPLMRPLYIFFFVSVDLAHRFIVNIPALEQMNQILHILFVLLPFLWALGTLPPPDALLFWAVEQVLE
FGLGGSSMSTHLRLLVMFIVSAGAAVVSYFIPSTVGVVLFMTGLGFLLSLNPSDVSMVFRYGVTRHRVGS
SHEARPGNSGHWFPWKECFLFIAVLGMALLEAGLLHHYVSVPQVSRSGAQAVVGYVLMVLLSIVWILRET
QSIYIFGIFRNPFYPKDIHAVSVFYDKQNKLLKIGAVRWILLTLVSPLAMVAFLALDSSLHGLHSVSVSI
GFTRAFRMVWQNTETALLETVVVSAVHMVSSTDCWWNRSLDTGIRLLLIGIMRDRLIQFITKLQFAVTVL
LALWTEKKQHRKTTTTLCVLNTVFAPFVLGIIVLSTLLSSPLLPLFTLPVFLVGFPRPVQSWPGAVGTAA
CVCTDSVFYHQMVPRLTAALQTAMAAGSLGLLLPGSHYLGRFEDRLIWIMILECGYTYCCINVKGLELQE
TSCHTAEAQRVDEVFESAFQREHPQVCSLNEHLENVLTPCTVLPVKLYSDARNVLTGIIDSPDNLKEFKD
DLIKVLVWVLIQHCSKRPSTQENKTENTGEASPALPPAANSSPCPESLEDSESANSDWSDGSIFDDEPAI
KNRKEKLQSKDLPCTKLPIPGSVDSQNPDDHSAGTGPKNDLYRTVILGLPAVDKGQREDVAYIPLVEFSC
SQSRLLSLPEEWRSNSTPRSKILEMSALFPEDWYQFVLRQLECFHSEEKSRVLEEIAKDKALKDLYVHTV
MACYIGLFGIDNGVPSPGQLVRVYNGGLPWAGTLDWLSEKPELFHLVRKAFRYTLKLMVDKASLGPIEDF
KELTNCLREYERDWYIGLVSEEQWKRAILEEKPCLFCLGYESSMGVYTSRVLMLQEMSVHIGKLNAEAVR
GQWANLSWELLYATNDDEERYSIQAHPLLLRNLTVQAADPPLGYPIFSSKPLPIHLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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