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Report for CCDS29545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29545.1 Public Mus musculus 19 Tmem179b 23 108 98 CCDS HistoryNCBI Gene:67706Re-query CCDS DB by CCDS ID:29545.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010249.6 ENSMUSP00000010249.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010249.6Link to Ensembl Protein Viewer:ENSMUSP00000010249.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000010249Re-query CCDS DB by Protein ID:ENSMUSP00000010249
Original member Current member NCBI NM_026325.3 NP_080601.2 Accepted alive Link to Nucleotide Sequence:NM_026325.3Link to Protein Sequence:NP_080601.2Re-query CCDS DB by Nucleotide ID:NM_026325Re-query CCDS DB by Protein ID:NP_080601Link to BLAST:NP_080601.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080601.2 219 Q9CY24 219 100% 0 0

Chromosomal Locations for CCDS 29545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8772673 8772834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8773028 8773106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8773290 8773424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8773505 8773692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8774335 8774430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGCGCTGCCCTGGTTGCAGCGAGTTGAGCTCTTGCTCTTCACTGCCGCCTTCCTGTGCGGGGCTTTGG
CGGCCGCGACGCTGACCCGGACCCAGGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACT
CAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCA
GGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCC
ACAGAGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTC
TGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAGC
TGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATA
CTGCTGAAACCTCTTCTTGGGTGAATCTGATATTGTGGTGTCTGGCTTTGCTGCTCCAGGCCATGCAGTG
CAAGTTTAAAGCCACATCATACCAGCCCCAAGAGAGGGGTGACCAAGAGTGGAGCTCTGAGACAGATGCT
CTTGTTGGGCACCACCAGTCTCACTCCTGA

Translation (219 aa):
MALPWLQRVELLLFTAAFLCGALAAATLTRTQGSFGGNCPLYGVAALNGSSLALLGPSAPSLCYFVAGAS
GILALYCLLLLFFWVYSSCIEDSHRGSIGLRIALAISATAIFLILVSACILRFGTNSFCNSIISLNLTIS
CSEAQKTSWTPSGTAVQFYSNLHTAETSSWVNLILWCLALLLQAMQCKFKATSYQPQERGDQEWSSETDA
LVGHHQSHS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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