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Report for CCDS24811.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24811.2 Public Mus musculus 11 Slc47a1 23 108 98 CCDS HistoryNCBI Gene:67473Re-query CCDS DB by CCDS ID:24811.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 24811.1
The coding region has been updated to represent an alternate splice variant with a longer and distinct N-terminus which is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24811.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010267.9 ENSMUSP00000010267.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010267.9Link to Ensembl Protein Viewer:ENSMUSP00000010267.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000010267Re-query CCDS DB by Protein ID:ENSMUSP00000010267
Original member Current member NCBI NM_026183.5 NP_080459.2 Accepted alive Link to Nucleotide Sequence:NM_026183.5Link to Protein Sequence:NP_080459.2Re-query CCDS DB by Nucleotide ID:NM_026183Re-query CCDS DB by Protein ID:NP_080459Link to BLAST:NP_080459.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080459.2 567 Q8K0H1-1 567 100% 0 0

Chromosomal Locations for CCDS 24811.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61344302 61344528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61348659 61348731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61349445 61349539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61352662 61352794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61353066 61353135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61359352 61359427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61359520 61359628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61362687 61362754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61362827 61362940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61363023 61363120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61363394 61363491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61367673 61367717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61369251 61369293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61370118 61370266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61371756 61371824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61373355 61373456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61377913 61378047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGGAACGCACGGAGGAGTCCGCTCCCGGGCCGGGAGGCGCGGACGCTGCGTCCGAGCGCCGTGGGCTAC
GCTGCCTGCTGCTGCCCGGCTTCCTAGAGGAGCTGCGGGCACTCTTGGTCCTGGCGGGTCCTGCGTTCTT
GGCCCAGCTGATGATGTTCCTAATCAGTTTCATAAGCTCAGTGTTCTGTGGCCACTTGGGCAAGCTGGAG
TTGGATGCAGTCACACTGGCAATTGCGGTTATCAATGTCACAGGCATTTCAGTGGGACATGGCTTGTCTT
CTGCTTGTGACACGCTCATCTCCCAGACATACGGGAGCCAGAACTTAAAGCACGTAGGGGTTATCCTGCA
AAGGGGGACACTCATCCTGCTCCTCTGCTGCTTTCCCTGCTGGGCACTCTTCATCAACACCGAGCAAATT
CTGCTGCTCTTCAGACAGGACCCGGATGTATCCAGGCTCACCCAGACTTACGTCATGATCTTCATCCCAG
CGCTTCCTGCAGCTTTTCTTTATACGTTACAAGTTAAATACTTGCTCAACCAGGGCATCGTTCTGCCTCA
GATTATGACGGGCATCGCAGCTAACCTTGTCAACGCCCTGGCCAACTATGTGTTTCTCTATCACCTGCAT
CTTGGGGTGATGGGTTCAGCATTGGCCAACACCATCTCCCAGTTTGCCCTGGCCATTTTCCTGTTCCTCT
ACATCCTCTGGAGAAGACTACACCAAGCCACCTGGGGAGGGTGGTCCTGGGAGTGTCTGCAGGACTGGGC
CTCCTTCCTGCGACTGGCTATCCCCAGCATGCTCATGCTGTGCATAGAGTGGTGGGCCTATGAGGTTGGC
AGCTTCCTGAGTGGTATCCTTGGCATGGTGGAGTTGGGAGCCCAGTCCATCACCTATGAATTGGCTATCA
TTGTATACATGATCCCTTCAGGCTTCAGTGTGGCTGCCAACGTCCGGGTGGGAAATGCACTGGGCGCAGG
AAACATTGACCAGGCCAAGAAGTCCTCAGCTATTTCCTTGATAGTCACAGAGCTCTTTGCTGTGACCTTC
TGCGTCCTGCTGCTAGGCTGTAAGGATCTCGTGGGCTACATTTTCACTACCGATCGGGATATCGTGGCCT
TGGTGGCTCAAGTGATCCCCATTTATGCTGTGTCCCACCTCTTTGAAGGTCTTGCTTGTACCTGTGGTGG
TATCCTGAGGGGCACTGGGAACCAGAAGGTTGGAGCCATCGTTAATGCCATCGGGTATTATGTCATTGGC
CTCCCCATCGGGATCGCGCTGATGTTTGCTGCTAAGCTGGGAGTGATCGGCCTGTGGTCAGGCATCATCA
TCTGCACTACCTGTCAGACCACGTGCTTCCTGGCTTTTATTGCTCGGCTCAATTGGAAACGCGCCTGTCA
ACAGGCTCAAGTACATGCCAATTTGAAGGTAAACGTGGCCCTGAATTCCGCTGTCTCTCACGAGCCTGCT
CACCCAGTGTGTCCTGAGAGCCATGGAGAAATTATGATGACGGATCTTGAAAAAAAAGACGAGACTCAGT
TGGACCAGCCGATGAACCAGCAACAAGCTTTGCCTATCCGTCCAAAGGACAGCAATAAACTGTCTGGGAA
ACAGTTGGCCTTACGGAGAGGACTCCTGCTCCTAGGGGTAGTCTTAGTCTTGGTGGGTGGGATTTTAGTG
AGAGTCTATATCAGAATTGAATAA

Translation (567 aa):
MERTEESAPGPGGADAASERRGLRCLLLPGFLEELRALLVLAGPAFLAQLMMFLISFISSVFCGHLGKLE
LDAVTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQI
LLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLH
LGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVG
SFLSGILGMVELGAQSITYELAIIVYMIPSGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTF
CVLLLGCKDLVGYIFTTDRDIVALVAQVIPIYAVSHLFEGLACTCGGILRGTGNQKVGAIVNAIGYYVIG
LPIGIALMFAAKLGVIGLWSGIIICTTCQTTCFLAFIARLNWKRACQQAQVHANLKVNVALNSAVSHEPA
HPVCPESHGEIMMTDLEKKDETQLDQPMNQQQALPIRPKDSNKLSGKQLALRRGLLLLGVVLVLVGGILV
RVYIRIE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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