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Report for CCDS24927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24927.1 Public Mus musculus 11 Ctdnep1 23 108 98 CCDS HistoryNCBI Gene:67181Re-query CCDS DB by CCDS ID:24927.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24927.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108593.7 ENSMUSP00000104234.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108593.7Link to Ensembl Protein Viewer:ENSMUSP00000104234.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108593Re-query CCDS DB by Protein ID:ENSMUSP00000104234
Original member Current member NCBI NM_026017.2 NP_080293.1 Accepted alive Link to Nucleotide Sequence:NM_026017.2Link to Protein Sequence:NP_080293.1Re-query CCDS DB by Nucleotide ID:NM_026017Re-query CCDS DB by Protein ID:NP_080293Link to BLAST:NP_080293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080293.1 244 Q3TP92 244 100% 0 0

Chromosomal Locations for CCDS 24927.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69981484 69981585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69984254 69984320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69984416 69984534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69984734 69984805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69988613 69988729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69988828 69988939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69989482 69989566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69989977 69990037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGATGCGGACGCAGTGTCTGCTGGGGCTGCGCACGTTCGTGGCCTTCGCCGCCAAGCTCTGGAGCTTCT
TTATTTACCTTTTGCGGAGGCAGATCCGCACGGTAATTCAGTATCAGACTGTTCGATATGATATCCTGCC
CTTATCTCCTTTGTCCCGGAATCGCCTAGCCCAGGTGAAGAGGAAGATCCTGGTGCTGGATCTGGACGAA
ACCCTGATTCACTCTCACCACGATGGGGTGCTGAGGCCTACAGTGAGACCTGGGACACCTCCCGACTTCA
TCCTCAAGGTGGTAATAGACAAACACCCAGTCCGGTTTTTTGTACATAAGAGGCCCCATGTGGATTTCTT
CTTAGAAGTGGTAAGCCAGTGGTATGAGCTTGTGGTGTTCACAGCAAGCATGGAAATTTATGGCTCTGCT
GTGGCAGATAAACTGGACAACAGCAGAAGCATTCTTAAGAGGAGATACTACAGACAGCACTGCACTTTGG
AGTTGGGCAGCTACATCAAAGACCTCTCCGTGGTCCACAGCGACCTGTCCAGCATCGTGATCCTGGACAA
CTCCCCCGGGGCTTACAGGAGCCACCCAGACAATGCCATCCCCATCAAATCCTGGTTCAGTGACCCCAGT
GACACAGCCCTTCTCAACCTTCTCCCAATGCTGGATGCCCTCAGGTTCACTGCTGATGTCCGATCGGTGC
TGAGCCGAAACCTTCACCAACATAGGCTCTGGTGA

Translation (244 aa):
MMRTQCLLGLRTFVAFAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPLSPLSRNRLAQVKRKILVLDLDE
TLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA
VADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPS
DTALLNLLPMLDALRFTADVRSVLSRNLHQHRLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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