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Report for CCDS16121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16121.1 Public Mus musculus 2 Cdca7 23 108 98 CCDS HistoryNCBI Gene:66953Re-query CCDS DB by CCDS ID:16121.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102691.10 ENSMUSP00000099752.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102691.10Link to Ensembl Protein Viewer:ENSMUSP00000099752.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102691Re-query CCDS DB by Protein ID:ENSMUSP00000099752
Original member NCBI NM_025866.3 NP_080142.1 Updated not alive Link to Nucleotide Sequence:NM_025866.3Link to Protein Sequence:NP_080142.1Re-query CCDS DB by Nucleotide ID:NM_025866Re-query CCDS DB by Protein ID:NP_080142
Current member NCBI NM_025866.4 NP_080142.1 Accepted alive Link to Nucleotide Sequence:NM_025866.4Link to Protein Sequence:NP_080142.1Re-query CCDS DB by Nucleotide ID:NM_025866Re-query CCDS DB by Protein ID:NP_080142Link to BLAST:NP_080142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080142.1 382 Q9D0M2 382 100% 0 0

Chromosomal Locations for CCDS 16121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 72476291 72476311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72478906 72479028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72481691 72481948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72482429 72482512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72483355 72483561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72483879 72484016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72484599 72484748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72485176 72485312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72485720 72485750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGAGGCTCGCCGCGCGCGGCAAAAGGCTCTCAAAGTAAAGAACTTAAAGGATGTCAGATATATGAAGT
TGATTTCCATGGAGACATCGTCCTCCTCCGATGACAGTTGTGACAGCTTTGCTTCTGATAATTTTGCAAA
CACAAGACTGCAGTTGAACAGGGAAGGCTGCAGGACCCGAAGTCAGTGCCGGCACTCCGGGCCTCTCAGG
GTAGCAATGAAGTTTCCGGCACGAAATACCCGGAGGGCGGCCAGCAAAAAAGCAGCGCCCCCAAAGCCCT
CTGAGAGCTCTGCAAACGATTCCCACTCTGACTCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGG
CATGAACTTTCTGGAGAAGAGAGCCTTAAATATAAAGCAGAACAAAGCAATGCTTGCAAAACTCATGTCA
GAATTAGAAAGCTTCCCTGGCTTGTTCTCTGGACGACATTCCCTCCCAGGCCACAGAGCCAAAGATTCAA
AGTCGCCTAGACGACGCACATTCCCAGGTGTGGCTACCAGAAGGAACCCGGAACGGAGAACTCGACCTCT
TACCAGGTCAAGGTCCCGGATCCTGGGCTCCTTGGGTGCCCTGCCCACCGAGGAAGAGGAGGAGGAAGAG
GAGGAGGAAGAGGATAAGTACATGCTGGTGAGACAGAGGAAGTCCATGGACAGCTACATGAACGACGATG
ATGTGCCCAGAAGTCGGAGGCCTGGATCCATGACCCTTCCGCATATAATCCGACCAGTAGAAGAAGTCAC
AGAGGAAGAGATTAGGAACATCTGCAGCAACTCGAGAGAGAAGATTTATAACCGCTCTCTGGGTTCTACA
TGTCATCAGTGTCGCCAGAAAACCACTGACACCAAAACCAACTGCCGAAACCCAGACTGCTGGGGCATCC
GGGGCCAATTCTGTGGTCCCTGCCTTCGAAACCGCTATGGCGAGGAGGTCAAGGACGCTCTGCTGGATCC
GAATTGGCACTGCCCACCTTGTCGAGGAATTTGCAACTGCAGCTTCTGCCGCCAGCGTGATGGGCGGTGC
GCCACTGGAGTCCTGGTGTATCTGGCAAAGTATCATGGCTTCGGGAACGTCCATGCTTACTTGAAAAGTC
TGAAGCAGGAATTTGAAATGCAAGCGTAG

Translation (382 aa):
MEARRARQKALKVKNLKDVRYMKLISMETSSSSDDSCDSFASDNFANTRLQLNREGCRTRSQCRHSGPLR
VAMKFPARNTRRAASKKAAPPKPSESSANDSHSDSEEEEEEEEEEDGMNFLEKRALNIKQNKAMLAKLMS
ELESFPGLFSGRHSLPGHRAKDSKSPRRRTFPGVATRRNPERRTRPLTRSRSRILGSLGALPTEEEEEEE
EEEEDKYMLVRQRKSMDSYMNDDDVPRSRRPGSMTLPHIIRPVEEVTEEEIRNICSNSREKIYNRSLGST
CHQCRQKTTDTKTNCRNPDCWGIRGQFCGPCLRNRYGEEVKDALLDPNWHCPPCRGICNCSFCRQRDGRC
ATGVLVYLAKYHGFGNVHAYLKSLKQEFEMQA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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