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Report for CCDS26643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26643.1 Public Mus musculus 13 Sdha 23 108 98 CCDS HistoryNCBI Gene:66945Re-query CCDS DB by CCDS ID:26643.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022062.7 ENSMUSP00000022062.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022062.7Link to Ensembl Protein Viewer:ENSMUSP00000022062.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022062Re-query CCDS DB by Protein ID:ENSMUSP00000022062
Original member Current member NCBI NM_023281.1 NP_075770.1 Accepted alive Link to Nucleotide Sequence:NM_023281.1Link to Protein Sequence:NP_075770.1Re-query CCDS DB by Nucleotide ID:NM_023281Re-query CCDS DB by Protein ID:NP_075770Link to BLAST:NP_075770.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075770.1 664 Q8K2B3 664 100% 0 0

Chromosomal Locations for CCDS 26643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74323087 74323173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74323841 74323954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74326927 74327057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74327247 74327358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74328297 74328415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74331299 74331470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74332099 74332294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74333022 74333190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74334298 74334422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74337391 74337539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74339047 74339211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74339572 74339715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74343337 74343498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74344851 74344937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74350146 74350208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGGCCGGGGTTGGCGCAGTTTCGAGGCTTCTTCGCGGGCGGCGCTTGGCGTTAACTGGGGCGTGGCCAG
GAACACTCCAAAAACAGACCTGCGGCTTTCACTTCTCTGTTGGTGAGAACAAGAAGGCATCAGCTAAAGT
TTCAGATGCAATTTCTACTCAATACCCAGTGGTGGATCATGAATTTGATGCTGTGGTTGTAGGCGCTGGA
GGGGCAGGCTTGCGAGCTGCATTTGGCCTTTCTGAGGCAGGGTTTAATACTGCATGCCTTACAAAGCTCT
TTCCTACCCGATCACATACTGTTGCAGCACAGGGAGGTATCAATGCTGCTCTGGGGAACATGGAAGAGGA
CAACTGGAGATGGCATTTCTATGACACTGTGAAAGGCTCCGACTGGCTGGGGGATCAGGATGCCATCCAT
TACATGACAGAGCAAGCTCCTGCCTCTGTGGTTGAGCTAGAAAATTATGGTATGCCATTTAGCAGAACTG
AAGATGGGAAGATTTATCAGCGTGCATTTGGTGGACAGAGCCTCAAGTTTGGGAAAGGCGGGCAGGCTCA
TCGGTGTTGCTGTGTGGCTGATCGGACAGGCCACTCACTCTTACACACGTTGTATGGAAGATCTCTGCGA
TATGACACCAGTTATTTTGTGGAATATTTTGCACTGGATCTTCTGATGGAAAATGGGGAGTGCCGTGGTG
TCATTGCACTGTGCATAGAAGATGGGTCCATACACCGAATAAGAGCAAAAAACACTGTTATTGCTACTGG
GGGCTACGGGCGAACCTACTTCAGCTGTACATCTGCCCATACCAGCACAGGGGACGGCACAGCCATGGTC
ACTAGGGCTGGTTTGCCTTGCCAGGACTTAGAATTTGTTCAGTTCCACCCCACAGGTATATACGGTGCTG
GCTGCCTCATCACAGAAGGGTGTCGTGGAGAGGGGGGGATTCTCATCAACAGTCAAGGTGAAAGGTTCAT
GGAGAGATACGCACCTGTTGCCAAGGACCTGGCATCAAGAGATGTTGTGTCTCGATCCATGACTCTTGAG
ATCCGTGAAGGAAGAGGCTGTGGCCCTGAGAAAGATCACGTCTACCTGCAGTTGCATCATCTGCCTCCTG
AGCAACTGGCCACACGTCTACCCGGAATTTCAGAGACGGCCATGATCTTCGCTGGTGTGGATGTCACTAA
GGAGCCCATCCCAGTCCTCCCCACTGTGCATTACAACATGGGTGGGATTCCCACTAACTACAAGGGACAG
GTGCTGAAGCATGTGAATGGCCAGGATCAGATTGTGCCTGGTCTGTATGCCTGTGGGGAGGCTGCCTGCG
CCTCAGTGCATGGTGCCAACCGGCTTGGAGCAAATTCTCTCTTGGACCTTGTAGTCTTTGGCAGAGCCTG
TGCCCTGAGCATTGCAGAATCTTGCAGGCCTGGAGATAAAGTTCCTTCAATTAAGGCAAATGCTGGAGAA
GAATCGGTTATGAATCTTGACAAGTTGAGATTTGCCGATGGAAGTATAAGAACATCAGAACTACGCCTAA
ACATGCAGAAGTCGATGCAGAACCATGCTGCAGTGTTCCGTGTGGGGAGTGTATTGCAAGAAGGCTGTGA
AAAAATCAGTCAGCTCTATGGAGACCTAAAGCATCTAAAGACATTCGACAGGGGAATGGTTTGGAACACA
GACCTGGTGGAGACCCTGGAGCTGCAGAATCTGATGCTGTGCGCACTGCAGACCATATATGGTGCAGAAG
CTCGGAAGGAGTCCCGGGGAGCCCATGCCAGGGAAGATTACAAAGTGCGGGTCGATGAGTATGATTACTC
CAAGCCCATCCAGGGACAGCAGAAGAAGCCGTTTGGGGAACACTGGAGGAAGCACACCCTCTCATATGTG
GACATCAAGACTGGCAAGGTTACTTTGGAGTACAGACCTGTTATCGACAAGACCTTGAATGAGGCTGACT
GTGCCACCGTACCTCCTGCTATCCGCTCCTACTGA

Translation (664 aa):
MAGVGAVSRLLRGRRLALTGAWPGTLQKQTCGFHFSVGENKKASAKVSDAISTQYPVVDHEFDAVVVGAG
GAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIH
YMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLR
YDTSYFVEYFALDLLMENGECRGVIALCIEDGSIHRIRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMV
TRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLE
IREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
VLKHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRPGDKVPSIKANAGE
ESVMNLDKLRFADGSIRTSELRLNMQKSMQNHAAVFRVGSVLQEGCEKISQLYGDLKHLKTFDRGMVWNT
DLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRVDEYDYSKPIQGQQKKPFGEHWRKHTLSYV
DIKTGKVTLEYRPVIDKTLNEADCATVPPAIRSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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