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Report for CCDS37272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37272.1 Public Mus musculus 16 Lztr1 23 108 98 CCDS HistoryNCBI Gene:66863Re-query CCDS DB by CCDS ID:37272.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023444.10 ENSMUSP00000023444.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023444.10Link to Ensembl Protein Viewer:ENSMUSP00000023444.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023444Re-query CCDS DB by Protein ID:ENSMUSP00000023444
Original member Current member NCBI NM_025808.4 NP_080084.2 Accepted alive Link to Nucleotide Sequence:NM_025808.4Link to Protein Sequence:NP_080084.2Re-query CCDS DB by Nucleotide ID:NM_025808Re-query CCDS DB by Protein ID:NP_080084Link to BLAST:NP_080084.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080084.2 837 Q9CQ33-1 837 100% 0 0

Chromosomal Locations for CCDS 37272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17509028 17509218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17509626 17509688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17512066 17512122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17515808 17515887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17515974 17516082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17517456 17517539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17518517 17518574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17519387 17519526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17520436 17520637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17520891 17521046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17521445 17521555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17522157 17522249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17522381 17522476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17522558 17522723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17522968 17523137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17523277 17523433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17524096 17524222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17524308 17524457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17525239 17525344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17525423 17525503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17525677 17525793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGGCTGGCTCCGGAGGCCCCATTGGGTCCGGGGCCTTGACAGGAGGGGTACGCTCCAAGGTGGCTCCGA
GCGTGGACTTTGACCACAGCTGCTCAGACAGTGTCGAGTACCTGACGCTCAACTTTGGACCCTTCGAAAC
AGTGCATCGCTGGCGGCGCCTCCCGCCCTGTGACGAATTCGTGGGCGCCCGGCGCAGCAAGCACACAGTC
GTGGCATATAAGGATGCCATCTATGTGTTTGGTGGAGACAACGGAAAGACGATGCTCAATGATCTTCTGC
GTTTCGATGTGAAGGATTGCTCCTGGTGCAGAGCCTTCACCACCGGCACCCCTCCAGCCCCCCGTTACCA
CCACTCTGCTGTGGTCTATGGGAGCAGCATGTTCGTCTTTGGGGGCTATACTGGAGATATTTATTCCAAT
TCTAACTTGAAGAATAAAAATGACCTCTTTGAATACAAATTTGCAACTGGCCAGTGGACGGAGTGGAAGA
TTGAAGGGAGGTTGCCTGTTGCCAGGTCAGCCCATGGGGCTACAGTGTACAGTGATAAGCTCTGGATCTT
TGCTGGTTATGATGGCAATGCCAGGTTGAACGACATGTGGACAATTGGCCTCCAAGACCGAGAGCTCACA
TGCTGGGAGGAGGTGGCCCAGAGTGGTGAGATCCCCCCATCCTGTTGCAACTTCCCTGTGGCTGTGTGCC
GGGATAAGATGTTCGTGTTCTCAGGACAGAGTGGAGCCAAGATAACTAACAACCTCTTCCAGTTTGAATT
CAAAGACAAGACGTGGACACGCATCCCTACTGAGCACCTGCTTCGGGGCTCCCCACCCCCGCCACAGCGG
CGCTACGGACACACCATGGTGGCCTTTGACCGCCATCTCTATGTGTTTGGGGGTGCAGCGGACAATACAC
TGCCCAATGAGTTGCACTGCTATGATGTGGACTTCCAGACCTGGGAGGTTGTCCAGCCCAGCTCTGACAG
TGAGGTTGGTGGGGCCGAGATGCCTGAGCGAGCTTCCTCTTCTGAGGATGCATCTACTCTAACCTCTGAA
GAGCGGAGCAGCTTTAAGAAGTCCAGAGATGTGTTTGGCTTAGACTTCGGCACCACTTCAGCCAAGCAGC
CTGTCCATCTGGCATCAGAGCTGCCCAGCGGGAGGCTCTTCCATGCTGCCGCTGTCATCTCTGATGCCAT
GTACATCTTTGGGGGCACTGTAGACAACAACATTCGCAGTGGGGAAATGTACAGGTTCCAGTTCTCTTGC
TACCCTAAGTGCACACTGCACGAAGATTATGGGCGCCTATGGGAGGGCCGCCAGTTCTGTGATGTGGAGT
TTGTGCTTGGTGAGAAGGAAGAGTGTGTGCAAGGCCATGTTGCCATCGTCACTGCAAGGAGCCGGTGGCT
TCGTAGGAAGATCGTACAGGCTCAAGAGTGGCTGGCCCAGAAGCTAGAGGAAGATGGGGCCCTAGCTCCC
AAGGAGGCCCCTGGCCCAGCTGTGGGCAGGGCACGGCCACCCCTGTTACGTGTGGCCATCCGTGAGGCTG
AGGCCCGGCCATTTGAGGTGCTCATGCAGTTTCTCTACACAGACAAGATCAAGTACCCACGGAAAGGCCA
TGTAGAAGACGTGCTGCTCATCATGGATGTGTATAAGTTGGCGCTGAGCTTCCAGCTGTGTCGCCTTGAG
CAGCTGTGTCGGCAGTACATCGAGGCCTCTGTAGATCTGCAGAATGTTCTGGTTGTGTGTGAGAGTGCTG
CCAGGCTACAGCTGGGCCAGCTCAAGGAGCATTGCCTGAACTTCATAGTGAAGGAATCCCACTTCAATCA
GGTGATCATGATGAAGGAGTTTGAGCGCCTCTCATCCCCACTGATTGTAGAGATAGTTCGTCGGAAGCAG
CAGCCGCCCCCTCGCACACCCTCCGATCAGCCTGTGGACATTGGCACATCTCTGATCCAAGACATGAAGG
CTTACCTGGAGGGAGCAGGCTCGGAGTTCTGTGACATCACACTACTGCTAGATGGCCAGCCACGGCCAGC
CCACAAAGCCATCCTAGCTGCCCGTTCTAGCTACTTTGAGGCCATGTTTCGGTCGTTCATGCCAGAGGAC
GGGCAGGTGAACATCTCCATTGGGGAGATGGTTCCCAGCAGACAGGCCTTCGAGTCCATGCTACGCTACA
TCTACTATGGCGAGGTCAACATGCCCCCTGAGGACTCGCTCTACCTGTTTGCAGCCCCGTACTATTACGG
CTTCTACAATAACCGACTGCAGGCTTACTGCAAGCAAAACCTAGAGATGAATGTCACAGTGCAGAATGTG
CTGCAGATTCTGGAGGCGGCTGACAAGACGCAGGCACTGGACATGAAGCGGCACTGTTTGCACATCATTG
TACACCAATTCACCAAGGTCTCTAAGCTGCCCACGCTGCGGTTGCTGAGCCAGCAGCTGCTGCTGGACAT
CATAGACTCCTTGGCCTCCCACATCTCTGACAAGCAGTGTGCAGAGCTGGGTGCTGACATCTGA

Translation (837 aa):
MAGSGGPIGSGALTGGVRSKVAPSVDFDHSCSDSVEYLTLNFGPFETVHRWRRLPPCDEFVGARRSKHTV
VAYKDAIYVFGGDNGKTMLNDLLRFDVKDCSWCRAFTTGTPPAPRYHHSAVVYGSSMFVFGGYTGDIYSN
SNLKNKNDLFEYKFATGQWTEWKIEGRLPVARSAHGATVYSDKLWIFAGYDGNARLNDMWTIGLQDRELT
CWEEVAQSGEIPPSCCNFPVAVCRDKMFVFSGQSGAKITNNLFQFEFKDKTWTRIPTEHLLRGSPPPPQR
RYGHTMVAFDRHLYVFGGAADNTLPNELHCYDVDFQTWEVVQPSSDSEVGGAEMPERASSSEDASTLTSE
ERSSFKKSRDVFGLDFGTTSAKQPVHLASELPSGRLFHAAAVISDAMYIFGGTVDNNIRSGEMYRFQFSC
YPKCTLHEDYGRLWEGRQFCDVEFVLGEKEECVQGHVAIVTARSRWLRRKIVQAQEWLAQKLEEDGALAP
KEAPGPAVGRARPPLLRVAIREAEARPFEVLMQFLYTDKIKYPRKGHVEDVLLIMDVYKLALSFQLCRLE
QLCRQYIEASVDLQNVLVVCESAARLQLGQLKEHCLNFIVKESHFNQVIMMKEFERLSSPLIVEIVRRKQ
QPPPRTPSDQPVDIGTSLIQDMKAYLEGAGSEFCDITLLLDGQPRPAHKAILAARSSYFEAMFRSFMPED
GQVNISIGEMVPSRQAFESMLRYIYYGEVNMPPEDSLYLFAAPYYYGFYNNRLQAYCKQNLEMNVTVQNV
LQILEAADKTQALDMKRHCLHIIVHQFTKVSKLPTLRLLSQQLLLDIIDSLASHISDKQCAELGADI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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