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Report for CCDS20636.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20636.1 Public Mus musculus 6 Bcl2l14 23 108 98 CCDS HistoryNCBI Gene:66813Re-query CCDS DB by CCDS ID:20636.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20636.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032321.10 ENSMUSP00000032321.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032321.10Link to Ensembl Protein Viewer:ENSMUSP00000032321.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032321Re-query CCDS DB by Protein ID:ENSMUSP00000032321
Original member Current member EBI ENSMUST00000111960.1 ENSMUSP00000107591.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111960.1Link to Ensembl Protein Viewer:ENSMUSP00000107591.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111960Re-query CCDS DB by Protein ID:ENSMUSP00000107591
Original member Current member EBI ENSMUST00000163589.7 ENSMUSP00000132525.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163589.7Link to Ensembl Protein Viewer:ENSMUSP00000132525.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163589Re-query CCDS DB by Protein ID:ENSMUSP00000132525
Original member Current member NCBI NM_001355686.1 NP_001342615.1 Accepted alive Link to Nucleotide Sequence:NM_001355686.1Link to Protein Sequence:NP_001342615.1Re-query CCDS DB by Nucleotide ID:NM_001355686Re-query CCDS DB by Protein ID:NP_001342615Link to BLAST:NP_001342615.1
Original member Current member NCBI NM_025778.3 NP_080054.1 Accepted alive Link to Nucleotide Sequence:NM_025778.3Link to Protein Sequence:NP_080054.1Re-query CCDS DB by Nucleotide ID:NM_025778Re-query CCDS DB by Protein ID:NP_080054Link to BLAST:NP_080054.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342615.1 328 Q9CPT0 328 100% 0 0
NP_080054.1 328 Q9CPT0 328 100% 0 0

Chromosomal Locations for CCDS 20636.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 134423618 134424062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134427296 134427460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134430066 134430136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134432146 134432412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134437701 134437739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGTGCAGCACCAGTGTGTATGACCTGGAAGACATTCCCCTGGAGGATGATGATCCAAACAGCATAGAGT
TCAAAATCCTGGCCTTCTACGCCAGACACCATGTCTTCAAGAACACCCCGGCTGTCTTCTCGCCCAAGCT
CTCCAGAACAAGGAGTCTGTCCCAGAAAGCCCTGGGGACTTGGTCAACTGATTCCTGGACACAGGTATCA
TTGCCTTGCAGAGGTTCCCCCTCCAGCGAAAAGAACATCAGCTTGGGCAAGAAGAAGTCTTCTTGGAGAA
CACTCTTCAGGGTGGCCGAGAAGGAGGAAGGCCTGCCGAGCTCCCCAAAGGAGATCCGAGCTCAGGGTCC
TCAGGGCCCCTTCCCGGTAGAGCGGCAGAGTGGCTTCCACAACCAGCACTGGCCCAGGTCTCTGAGCAGT
GTGGAGCAGCGCCTGGAGAGTGAAGTTGTGGATTCCAAAGTGGCTTGTATTGCCAACAGAGTGGCTGAAA
TTGTTTACTCCTGGCCACCACCAGATGTCATCCACAGCCAGGGAGGAAGCAAGCTCAAAGAGAGGGTCTC
GGAGATTCTGTACTTCAGGTTTGAAGGACCTTGTGACTCTAAGAATAAAGATGGAGAAGACCAAATAATA
AGCAAGATTGTTGAGCTGCTGAAATTCTCGGGGGATCAGTTGGGAAGAGAGATAAAGAAAGACAAGGCTT
TGATGAGCAGCTTCCAGGACGGGCTGTCCTACTCAACGTTCAAGACCATCACAGACCTGTTCCTGAGGGA
CGTGGACACCAGAGGAGAATCAGAGGTCAAAGCTCGGGGCTTCAAGGCTGCCCTTGCAATAGACGCCATC
GCCAAGCTCACGGCCATCGACAACCACCCAATGAATAGAATGCTGGGCTTCGGGACCAAGTACCTAAGAG
AGTACTTCTCCCCCTGGGTTCAGCAGAATGGCGGATGGGAAAAAATACTTGGGATCTCACATGAAGAAGT
AGACTGA

Translation (328 aa):
MCSTSVYDLEDIPLEDDDPNSIEFKILAFYARHHVFKNTPAVFSPKLSRTRSLSQKALGTWSTDSWTQVS
LPCRGSPSSEKNISLGKKKSSWRTLFRVAEKEEGLPSSPKEIRAQGPQGPFPVERQSGFHNQHWPRSLSS
VEQRLESEVVDSKVACIANRVAEIVYSWPPPDVIHSQGGSKLKERVSEILYFRFEGPCDSKNKDGEDQII
SKIVELLKFSGDQLGREIKKDKALMSSFQDGLSYSTFKTITDLFLRDVDTRGESEVKARGFKAALAIDAI
AKLTAIDNHPMNRMLGFGTKYLREYFSPWVQQNGGWEKILGISHEEVD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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