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Report for CCDS49161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49161.1 Public Mus musculus 12 Gskip 23 108 98 CCDS HistoryNCBI Gene:66787Re-query CCDS DB by CCDS ID:49161.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051934.6 ENSMUSP00000057939.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051934.6Link to Ensembl Protein Viewer:ENSMUSP00000057939.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000051934Re-query CCDS DB by Protein ID:ENSMUSP00000057939
Original member Current member NCBI NM_178613.3 NP_848728.2 Accepted alive Link to Nucleotide Sequence:NM_178613.3Link to Protein Sequence:NP_848728.2Re-query CCDS DB by Nucleotide ID:NM_178613Re-query CCDS DB by Protein ID:NP_848728Link to BLAST:NP_848728.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848728.2 144 Q8BGR8-2 144 100% 0 0

Chromosomal Locations for CCDS 49161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 105685445 105685458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105698718 105698976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105700638 105700799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGGCGCTCGCAGAATGGAAACAGACTATAATCCCGTGGAGCTAAGCAGTATGTCTGGATTTGAAGAAG
GCTCCGAGCTCAATGGGTTTGAAGGAGCGGATATGAAGGACATGCAGCTGGAGGCCGAGGCAGTTGTAAA
CGATGTACTCTTTGCTGTCAACCACATGTTTGTCTCAAAAAGCATGCCCTGTGCAGATGATGTGGCTTAC
ATCAATGTGGAGACAAAGGAAAGGAACAGATACTGCCTGGAGCTCACAGAAGCAGGGCTCAGGGTGGTGG
GCTATGCTTTTGACCAGGTGGAGGATCATTTGCAAACCCCCTACCATGAGACAGTCTACTCCTTGTTGGA
TACTCTCAGCCCTGCCTACCGGGAAGCATTCGGAAACGCGCTCCTTCAGAGACTGGAAGCTTTGAAACGA
GATGGACAGTCATGA

Translation (144 aa):
MGARRMETDYNPVELSSMSGFEEGSELNGFEGADMKDMQLEAEAVVNDVLFAVNHMFVSKSMPCADDVAY
INVETKERNRYCLELTEAGLRVVGYAFDQVEDHLQTPYHETVYSLLDTLSPAYREAFGNALLQRLEALKR
DGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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