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Report for CCDS18317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18317.1 Public Mus musculus 4 Hacd4 23 108 98 CCDS HistoryNCBI Gene:66775Re-query CCDS DB by CCDS ID:18317.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030221.2 ENSMUSP00000030221.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030221.2Link to Ensembl Protein Viewer:ENSMUSP00000030221.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030221Re-query CCDS DB by Protein ID:ENSMUSP00000030221
Original member NCBI NM_025760.4 NP_080036.1 Updated not alive Link to Nucleotide Sequence:NM_025760.4Link to Protein Sequence:NP_080036.1Re-query CCDS DB by Nucleotide ID:NM_025760Re-query CCDS DB by Protein ID:NP_080036
Current member NCBI NM_025760.5 NP_080036.1 Accepted alive Link to Nucleotide Sequence:NM_025760.5Link to Protein Sequence:NP_080036.1Re-query CCDS DB by Nucleotide ID:NM_025760Re-query CCDS DB by Protein ID:NP_080036Link to BLAST:NP_080036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080036.1 232 A2AKM2-1 232 100% 0 0

Chromosomal Locations for CCDS 18317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88414264 88414346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88419699 88419824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88422991 88423097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88426736 88426848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88434939 88435066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88437460 88437563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88438833 88438870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGGGCCCTCGGTGCTGCCAGCCTGGCTGCAGCCCAGGTATAGGAAGAATGTATATCTTTTCATCTATT
ACTTAATTCAGTTCTGTGGCCACTCATGGATACTGGCAAATATGACAGTCAGATTCTTCTCATTTGGGAA
AGATTCCATGGCCGACACGTTTTACGCTATTGGGTTAGTTATGCGGGTTTGCCAATCCATTTCCCTTTTG
GAACTTCTGCACATTTACATTGGCATTGAGTCGAATCAGCTTTTCCCACGGTTTTTGCAGCTCACAGAGA
GAGTGATCATTCTCTTTGGGGTGATCACCAGTCAAGAGGAGGTCCAAGAGAAATGTGTAGTGTGTGTTTT
ATTCATCCTTTGGAATCTACTGGATATGGTAAGGTACACTTACAGCATGCTGTCAGTCATAGGGACATCT
TATGCTGCCTTGACATGGCTCAGTCAAACACTCTGGATGCCAATTTACCCTCTGTGTGTTCTTGCTGAAG
CATTCACCATCTATCAGTCACTGCCTTATTTTGAGTCATTTGGTACAAACTCCACCGTGCTTCCGTTCGA
CCTATCTACCTGTTTCCCTTATGTGCTGAAGCTGTACCTCATGATGCTCTTCATAGGTATGTATTTCACC
TACAGCCATCTTTATACAGAAAGAAAAGACTTCCTCCGAGTTTTTTCTGTCAAACAGAAGAACGTGTGA

Translation (232 aa):
MGPSVLPAWLQPRYRKNVYLFIYYLIQFCGHSWILANMTVRFFSFGKDSMADTFYAIGLVMRVCQSISLL
ELLHIYIGIESNQLFPRFLQLTERVIILFGVITSQEEVQEKCVVCVLFILWNLLDMVRYTYSMLSVIGTS
YAALTWLSQTLWMPIYPLCVLAEAFTIYQSLPYFESFGTNSTVLPFDLSTCFPYVLKLYLMMLFIGMYFT
YSHLYTERKDFLRVFSVKQKNV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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