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Report for CCDS26755.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26755.1 Public Mus musculus 13 Nt5el 23 108 98 CCDS HistoryNCBI Gene:66763Re-query CCDS DB by CCDS ID:26755.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26755.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022232.5 ENSMUSP00000022232.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022232.5Link to Ensembl Protein Viewer:ENSMUSP00000022232.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022232Re-query CCDS DB by Protein ID:ENSMUSP00000022232
Original member Current member NCBI NM_025751.3 NP_080027.1 Accepted alive Link to Nucleotide Sequence:NM_025751.3Link to Protein Sequence:NP_080027.1Re-query CCDS DB by Nucleotide ID:NM_025751Re-query CCDS DB by Protein ID:NP_080027Link to BLAST:NP_080027.1

Chromosomal Locations for CCDS 26755.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 105082160 105082350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105100434 105100585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105109276 105109856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105111098 105111245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105112352 105112517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105118651 105118798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105119811 105119997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 105121237 105121421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGGAGGCCCCTGAGGAAGAGCCACCTGCTCTGGCACCCCCTCAGCCTGCGAAGCTTGGGGAAGAACTCT
CTCCCCAAACCCAGGGGAACCAGTCAGGAGACATGGACTCCTATAACTTGACTATACTTCATTTCAACGA
TGTTTACGATGTGGACTCGAGTACTGAAGAGCCTGTAGGAGGCGCTGCTAGGTTTGCCACAGCCGTGAAA
AGATTCAGCATCCTGAATCCACTCTTGATTTTCAGTGGCGACTGCTTAAATCCTTCCATCTTAAGCACAA
TAACAAAAGGAAAGCATATGATCTCTATATTAAATGAGTTGGGAGTACATTTTGCAGTTTTTGGAAACCA
TGAGTTTGATTTTGGTGTTGATATTTTGGAAGAGTATATGAAACAAATGCACTTTACCTGGTTCCTCAGT
AACGTCCATGACAGATTCACATCTGAACCTCTTGGGCATGGTGCAGTCAAAAAGATAGTTAACTGGAACA
ATCGGAAAATTGGCTTAATGGGACTAGTTGAAGAAGACTGGCTTGATACTCTGGCCACAGTTAATAAGGC
CAATGTAAATTATAAAGATTATGTGGAAACTGCTAATGAGCTAGCCGTGGAGCTCCGAGCAGAAGGGGCT
GACCTTGTGATCGCCATGACGCACATGAAGTGGAAAAATGACACCAGGCTTGCCCAGCATGCAGAAGGGC
TTGATTTGATCCTGGGAGGCCATGACCACGAATATGGGATCAAGAAAGTGAACGAGACTTGGATTGTCAA
GAGTGGATCTGATTTTAAAAATCTGACAAAAATAGACATACAGCTGTTCGATGCTTCGTTCCAGTATGTA
TTTGAGAAAGTGGAAATTTTGAGCTACTTGGAAGAAGATTCATATATCAAAGCAATAGTAAGAGATTTTA
CTCAAAACATACAGTATATGTTAGAAGAAGTTCTTTGCCCAATTGATGTGGCATTGGATGGCCGTGAGAT
TACTGTAAGAAGATGTGAGAGCAACCTTGGAAATCTGGTGACAAATGCAATGTTAGAGGCCACGCATGCT
GATGTGGCACTCCTTAATTCAGGTACTCTCAGGTATGACAGAATACACCCGCCAGGGAATTTCACTCTGC
ATGACCTTTTGGCCATACTCCCCATTGTGGACCCAGTTTTAGTTGTCAGAGCAACGGGTGCACAGCTGCT
GGAAGCACTTGAAAATGGGGTTTACAAGTACCCAGCTCTGGATGGCAGGTTTCCTCAAGTTGCTGGGTTA
GAATTTGGATTTGATCCAGATGCAGAACCAGGCCATCGAGTCATAAGAGACACTGTGAAAGTTCAAGGAC
AGTACTTACAGAGGAAGAAAGTCTATCTGCTGGCCATCAAGGAGTACATTGCAAACGGGAAGGATGGCTA
CAGTATGTTTAGAGCTTGCCCTCGGATGTTTGACCCCGAGACAGCTCAGGTGCTGTCTACAGTCGTCATG
AATCACTTTGAATCCATAAAAATTTTGCAAGGAAAGAAGAAGTGTCTTTCCGGCCATCGGATGAGTTTGA
TCACGACGACAAACAAATCGCCATCCCTCACAGCCTTTGAGGAAGAAACAGATGGGCCATTGGGAGTAAT
TGCAGTGCCTGGCCTAGAAGGAAGAATCTTCCATATTTCTCCAGACATGAAAGAACATTTGCACCAACTT
AGAGCTGCGAGACAGCAAGGCCTGAGAACTTTCCCCACCATTAGTGACAGTGCACGTGAGACCTCTGATT
CTGACTAA

Translation (585 aa):
MEAPEEEPPALAPPQPAKLGEELSPQTQGNQSGDMDSYNLTILHFNDVYDVDSSTEEPVGGAARFATAVK
RFSILNPLLIFSGDCLNPSILSTITKGKHMISILNELGVHFAVFGNHEFDFGVDILEEYMKQMHFTWFLS
NVHDRFTSEPLGHGAVKKIVNWNNRKIGLMGLVEEDWLDTLATVNKANVNYKDYVETANELAVELRAEGA
DLVIAMTHMKWKNDTRLAQHAEGLDLILGGHDHEYGIKKVNETWIVKSGSDFKNLTKIDIQLFDASFQYV
FEKVEILSYLEEDSYIKAIVRDFTQNIQYMLEEVLCPIDVALDGREITVRRCESNLGNLVTNAMLEATHA
DVALLNSGTLRYDRIHPPGNFTLHDLLAILPIVDPVLVVRATGAQLLEALENGVYKYPALDGRFPQVAGL
EFGFDPDAEPGHRVIRDTVKVQGQYLQRKKVYLLAIKEYIANGKDGYSMFRACPRMFDPETAQVLSTVVM
NHFESIKILQGKKKCLSGHRMSLITTTNKSPSLTAFEEETDGPLGVIAVPGLEGRIFHISPDMKEHLHQL
RAARQQGLRTFPTISDSARETSDSD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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