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Report for CCDS29248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29248.1 Public Mus musculus 18 Zfp474 23 108 98 CCDS HistoryNCBI Gene:66758Re-query CCDS DB by CCDS ID:29248.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072666.3 ENSMUSP00000072453.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072666.3Link to Ensembl Protein Viewer:ENSMUSP00000072453.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072666Re-query CCDS DB by Protein ID:ENSMUSP00000072453
Original member Current member EBI ENSMUST00000209270.1 ENSMUSP00000147873.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209270.1Link to Ensembl Protein Viewer:ENSMUSP00000147873.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209270Re-query CCDS DB by Protein ID:ENSMUSP00000147873
Original member Current member NCBI NM_001360984.1 NP_001347913.1 Accepted alive Link to Nucleotide Sequence:NM_001360984.1Link to Protein Sequence:NP_001347913.1Re-query CCDS DB by Nucleotide ID:NM_001360984Re-query CCDS DB by Protein ID:NP_001347913Link to BLAST:NP_001347913.1
Original member Current member NCBI NM_025749.3 NP_080025.3 Accepted alive Link to Nucleotide Sequence:NM_025749.3Link to Protein Sequence:NP_080025.3Re-query CCDS DB by Nucleotide ID:NM_025749Re-query CCDS DB by Protein ID:NP_080025Link to BLAST:NP_080025.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347913.1 347 Q6V5K9 347 100% 0 0
NP_080025.3 347 Q6V5K9 347 100% 0 0

Chromosomal Locations for CCDS 29248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 52638277 52639320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGAAAGCGGAAATGAAAGGATTTCCAGCCAATCACAAGGAACTATCCACCTCTCCAAAGAGCCCACCT
TCCTTATCCAGCAGGCTACCCTGCCGAGTGACCTCCATTCAACCCTTCTGCAGGAAACACAGTGTGGCGG
TCTAACCAAAAACATAAAGGCCAACACTCAGAAAAGGCGTCCGGGAACAGTGATTCTATCAAAACGCTCA
AGTCGAATTATGTCAGAAACCCAGCCTAGACCCCCTGTGATCCCATCCCGCAGGCCAGGGTTCCGGATAT
GCTATATTTGTGGCCGAGAATTCGGGTCCCAGTCACTTGCCATTCATGAGCCCCAGTGCTTGGAGAAGTG
GCGCACTGAGAACAGCAAACTACCCAAGCACCTGAGGAGGCCAGAACCCTCCAAACCGCAGCCCATCGGT
GGCACTGACTCCCACAGCCTTCAGGCAGCCAATGAGGAAGCATTTCAGAGTGCTCAGGCTCAGCTGCTGC
CCTGTGAAAACTGCGGCCGCACGTTCTTGCCAGACCGTCTCCTGGTTCACCAGAGAAGCTGCAAGCCAAA
GGGTGAGAACCCTGGACCACCAAGCATGGGTAGTTCTAATGTTCCTACTGGTCTCAAGAAAGCTTCTAGC
GGCATCCCAGCCCGACCAAGGACTCTCATCTGTTACATTTGTGGTAGGGAATTTGGCACGCTGTCCCTTC
CTATCCATGAGCCCAAATGCTTGGAAAAGTGGAAAATTGAGAATGACCAACTCCCTAGAGAGCTGCGTCG
GCCACAGCCCCAGAAGCCTCAACCCCTTCCAGCTGGACAGTCCAGCCAAGAGGGGGCGAGTCAAGCCGCA
CTTGTGCCTTGCCCAAATTGTGGCCGGACTTTTGCTGTGGACCGCCTACCTGTACACCAGAGAAGTTGTA
AATCTCAACCTAGTGGACCAAAAACTTCAAATTCGAACATAGAAAGGAAAGGCGGTCCAAATCCACCCAC
TAATTCCAAGCAACAGAGGAACATGGAAGCACCCAATGGGGACAAGGTAACTGGTGTCATTTAA

Translation (347 aa):
MESGNERISSQSQGTIHLSKEPTFLIQQATLPSDLHSTLLQETQCGGLTKNIKANTQKRRPGTVILSKRS
SRIMSETQPRPPVIPSRRPGFRICYICGREFGSQSLAIHEPQCLEKWRTENSKLPKHLRRPEPSKPQPIG
GTDSHSLQAANEEAFQSAQAQLLPCENCGRTFLPDRLLVHQRSCKPKGENPGPPSMGSSNVPTGLKKASS
GIPARPRTLICYICGREFGTLSLPIHEPKCLEKWKIENDQLPRELRRPQPQKPQPLPAGQSSQEGASQAA
LVPCPNCGRTFAVDRLPVHQRSCKSQPSGPKTSNSNIERKGGPNPPTNSKQQRNMEAPNGDKVTGVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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