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Report for CCDS19120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19120.1 Public Mus musculus 5 Fastk 23 108 98 CCDS HistoryNCBI Gene:66587Re-query CCDS DB by CCDS ID:19120.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030800.12 ENSMUSP00000030800.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030800.12Link to Ensembl Protein Viewer:ENSMUSP00000030800.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030800Re-query CCDS DB by Protein ID:ENSMUSP00000030800
Original member Current member NCBI NM_023229.2 NP_075718.2 Accepted alive Link to Nucleotide Sequence:NM_023229.2Link to Protein Sequence:NP_075718.2Re-query CCDS DB by Nucleotide ID:NM_023229Re-query CCDS DB by Protein ID:NP_075718Link to BLAST:NP_075718.2

Chromosomal Locations for CCDS 19120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24441154 24441261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24441336 24441450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24441528 24441663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24441732 24441823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24441924 24442083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24442182 24442395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24443004 24443143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24443277 24443456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24443895 24444305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24445066 24445147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGAGGAGGCCGCGGGGGGAGCCCGGCTCCCGGGCCCCAAGACCAGCTGAGAGAGTGACCTACGCGGGGC
CCGGGGAGTCATGGTCTCCACCACCCAGCTCCATGCTTCGAATCCTGCTCTCTGCCCAGACTTCCCCTGC
TCGGCTGTCTGGTTTGCTGCTCATCCCACCAGTACAGCCCTGTTGTTTGGGACCCAGCAAGTCCGGGGAC
CGGCCTTTTGGAGGAGGCCCTGTGCAAGGCCTTCAACGGCTTCTGGAACAGGCACGGAGCCCTGGGGAGC
TACTGCGATGGCTGAGCCAGAACCCCACCAAGGTGCGAGCTCATCACTACCCTGTGGCACTCCGGCGTCT
GGGCCAGCTCTTGGTGTCTCAGCCTAGGCCCTCTCCTGTGGAGCAGGCCACACTGCAGGACTTGAGTCAG
CTCATCATCCGAAACTGCCCCTCCTTTGACGTTCACACCATCCATGTGTGTCTCCACCTTGCAGTGTTAC
TTGGCTTTCCATCAGATGGACCACTCCTGTGTGCCCTCGAGCAGGAGCGCAGGTCCCGTCTCCCTCCAAA
GCCACCCTCCCCACATCGGCCTGCCATCTATGGTGGTCAAAGGTTGGAAGTGGCCCTGAGCTGCCCCCGT
TTCCTGCAGTACCCTCGTCAGCATCTGATCAGAAGCCTGGCAGAGGCAAGGCCAGAAGAACTGACTCCTC
ACGTAATGGTGCTTCTGGCCCAACACCTGGCCCGGCACCGCTTGCGGGAACCCCAACTTCTGGAAGCCAT
TGCTCATTTCCTGGTGGTTCAGGAAGCCCAGCTCAACAGCAAGGTGGTACAGAAGTTGGTCCTGCCCTTT
GGGAGGTTGAACTACATGCCCCTGGAGCAGCAATTTATGCCCTGCCTTGAGAGGATCCTGGCTCGGGAAG
CAGGGGTGGCACCCTTGGCCACAGTCAACATTTTGATGTCGCTGTGCCAGCTGCAGTGCCTGCCCTTCAG
AGCCCTGCAGTTTGTCTTTTCTCCCAGTTTTATCAACCACATCAATGGCACCCCTCCTTCTCTGATTGTG
CGACGCTACCTCTCTCTACTCGATACGGCTGTGGAGCTTGAACTCCCAGGATACCAAGGCCCCCGCCTTC
CCCAGAGGCAGCGAGTGCCCATCTTCCCACAGCCCCTCATCACTGACCGTGCCCGCTGCAAATACAGTCA
CAAGGACATGGTCGCTGAGGGGCTGCGCCAGCTATTAGGGGAAGAAAACTACCGTCAGAATCTGACTGTA
CCTCCGGGCTACTGCACAGACTTTCTACTCTGTGTGAGTAGTTCTGGTGCTGTGCTGCCTATGAGGACAC
AAGACCCCTTCCTGCCCTACCCACCACGGTCCTGCCAACAGGACCAGGCAAACTTTAACTCCACAACCCA
AGACCCTGCCCAAAGGGTGGTGCTGATGCTGAGAGAACGCTGGCATTTCTGCCGAGACGGCAGGGTGCTG
CTGGGCTCGCGGGCCTTGAGGGAGCGGCACCTGGGCCTAATGGGCTACCAACTCCTACCGCTGCCATTTG
AAGAGCTGGAGTCTCAAAGAGGCCTGCCCCAGCTCAAGAGCTACCTGAGGCAAAAGCTTCAGGCCTTAGG
TCTTCGCTGGGGACCTGAGGGTGGGTGA

Translation (545 aa):
MRRPRGEPGSRAPRPAERVTYAGPGESWSPPPSSMLRILLSAQTSPARLSGLLLIPPVQPCCLGPSKSGD
RPFGGGPVQGLQRLLEQARSPGELLRWLSQNPTKVRAHHYPVALRRLGQLLVSQPRPSPVEQATLQDLSQ
LIIRNCPSFDVHTIHVCLHLAVLLGFPSDGPLLCALEQERRSRLPPKPPSPHRPAIYGGQRLEVALSCPR
FLQYPRQHLIRSLAEARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVVQEAQLNSKVVQKLVLPF
GRLNYMPLEQQFMPCLERILAREAGVAPLATVNILMSLCQLQCLPFRALQFVFSPSFINHINGTPPSLIV
RRYLSLLDTAVELELPGYQGPRLPQRQRVPIFPQPLITDRARCKYSHKDMVAEGLRQLLGEENYRQNLTV
PPGYCTDFLLCVSSSGAVLPMRTQDPFLPYPPRSCQQDQANFNSTTQDPAQRVVLMLRERWHFCRDGRVL
LGSRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQALGLRWGPEGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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