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Report for CCDS22679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22679.1 Public Mus musculus 8 Ctrb1 23 108 98 CCDS HistoryNCBI Gene:66473Re-query CCDS DB by CCDS ID:22679.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034435.6 ENSMUSP00000034435.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034435.6Link to Ensembl Protein Viewer:ENSMUSP00000034435.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034435Re-query CCDS DB by Protein ID:ENSMUSP00000034435
Original member Current member NCBI NM_025583.2 NP_079859.2 Accepted alive Link to Nucleotide Sequence:NM_025583.2Link to Protein Sequence:NP_079859.2Re-query CCDS DB by Nucleotide ID:NM_025583Re-query CCDS DB by Protein ID:NP_079859Link to BLAST:NP_079859.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079859.2 263 Q9CR35 263 100% 0 0

Chromosomal Locations for CCDS 22679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111686587 111686748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111687101 111687234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111688545 111688725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111689141 111689219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111689325 111689404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111689497 111689600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111690941 111690992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGCATTCCTTTGGCTTGTGTCCTGCTTTGCCCTTGTGGGCGCCACCTTTGGCTGTGGGGTCCCTGCCA
TCCAACCCGTGCTGACCGGTCTGTCCAGGATCGTCAACGGAGAGGATGCTATCCCTGGCTCCTGGCCCTG
GCAGGTGTCCCTGCAGGACAGAACTGGCTTCCATTTCTGCGGGGGCTCCCTCATCAGCGAAAACTGGGTG
GTCACTGCTGCCCACTGCGGGGTCAAGACAACCGATGTGGTGGTAGCTGGAGAGTTTGATCAGGGCTCCG
ATGAAGAGAATGTCCAGGTCCTGAAAATCGCTCAGGTTTTTAAGAACCCCAAGTTCAACTCCTTCACCGT
GCGTAATGACATCACCCTGCTGAAGCTGGCCACTCCTGCCCAGTTCTCTGAGACTGTGTCTGCCGTGTGT
CTGCCCACTGTTGACGATGACTTCCCTGCTGGGACACTGTGTGCCACCACTGGCTGGGGCAAGACCAAAT
ACAATGCCCTCAAGACCCCTGACAAGCTGCAGCAGGCTGCCCTGCCCATCGTGTCCGAGGCTAAGTGCAA
GGAGTCCTGGGGTTCCAAGATCACCGATGTGATGATCTGCGCAGGCGCCAGTGGCGTCTCTTCCTGCATG
GGTGACTCTGGTGGCCCCCTCGTCTGCCAGAAGGACGGAGTCTGGACCCTGGCAGGCATTGTGTCCTGGG
GCAGTGGTTTCTGCTCCACTTCCACCCCTGCCGTGTATGCCCGAGTCACTGCCCTCATGCCCTGGGTTCA
GGAGATCTTGGAAGCCAACTAA

Translation (263 aa):
MAFLWLVSCFALVGATFGCGVPAIQPVLTGLSRIVNGEDAIPGSWPWQVSLQDRTGFHFCGGSLISENWV
VTAAHCGVKTTDVVVAGEFDQGSDEENVQVLKIAQVFKNPKFNSFTVRNDITLLKLATPAQFSETVSAVC
LPTVDDDFPAGTLCATTGWGKTKYNALKTPDKLQQAALPIVSEAKCKESWGSKITDVMICAGASGVSSCM
GDSGGPLVCQKDGVWTLAGIVSWGSGFCSTSTPAVYARVTALMPWVQEILEAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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