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Report for CCDS29555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29555.1 Public Mus musculus 19 1810009A15Rik 23 108 98 CCDS HistoryNCBI Gene:66276Re-query CCDS DB by CCDS ID:29555.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096251.9 ENSMUSP00000093970.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096251.9Link to Ensembl Protein Viewer:ENSMUSP00000093970.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096251Re-query CCDS DB by Protein ID:ENSMUSP00000093970
Original member Current member NCBI NM_025463.3 NP_079739.1 Accepted alive Link to Nucleotide Sequence:NM_025463.3Link to Protein Sequence:NP_079739.1Re-query CCDS DB by Nucleotide ID:NM_025463Re-query CCDS DB by Protein ID:NP_079739Link to BLAST:NP_079739.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079739.1 123 Q9D937 123 100% 0 0

Chromosomal Locations for CCDS 29555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8888926 8888964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8889124 8889248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8890003 8890100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8890411 8890520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGCACCTCCGGGAGGAAAGATCAATCGTCCCCGGACGGAGCTGAAGAAGAAGTTGTTCAAGCGCCGCA
GGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTAC
GAAGCACCACCTCAAGAAGCGGGCGTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGG
AAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAGTGGAAGCCCCCTCCAAGT
CAACCAGGACTAGTCAGCCACAGCCCAAGCAACAAAAGAAGATAAAAGCTCCCCAGGACGTAGCTATGGA
GGATCTTGAAGATAAGAGCTAA

Translation (123 aa):
MAPPGGKINRPRTELKKKLFKRRRVLSRDRRRKRQVVGAVIDEGLTTKHHLKKRASSARANITLSGKKRR
KLLQQIRLAQKEKAAMEVEAPSKSTRTSQPQPKQQKKIKAPQDVAMEDLEDKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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