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Report for CCDS39342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39342.1 Public Mus musculus 5 Lamtor4 23 108 98 CCDS HistoryNCBI Gene:66096Re-query CCDS DB by CCDS ID:39342.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062067.7 ENSMUSP00000056693.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062067.7Link to Ensembl Protein Viewer:ENSMUSP00000056693.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062067Re-query CCDS DB by Protein ID:ENSMUSP00000056693
Original member Current member NCBI NM_001081108.2 NP_001074577.1 Accepted alive Link to Nucleotide Sequence:NM_001081108.2Link to Protein Sequence:NP_001074577.1Re-query CCDS DB by Nucleotide ID:NM_001081108Re-query CCDS DB by Protein ID:NP_001074577Link to BLAST:NP_001074577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074577.1 99 Q8CF66 99 100% 0 0

Chromosomal Locations for CCDS 39342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138255801 138255803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138256253 138256333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138258655 138258772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138259040 138259137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGACTTCCGCACTGACCCAAGGGCTGGAGCGAATCCCAGACCAGCTTGGCTACCTGGTGCTGAGCGAAG
GTGCAGTGCTGGCGTCATCTGGGGACCTTGAGAACGATGAGCAAGCAGCCAGTGCCATCTCGGAGTTGGT
CAGCACAGCCTGTGGCTTCCAGTTGCACCATGGCACGAACATCCCTTTCAAACGCCTGTCTGTGGTCTTT
GGTGAACACACGCTGCTGGTGACTGTGTCAGGACAGAGGGTGTTTGTAGTGAAGAGGCAGAACCGAGGTC
GTGAACCTATTGATGTCTGA

Translation (99 aa):
MTSALTQGLERIPDQLGYLVLSEGAVLASSGDLENDEQAASAISELVSTACGFQLHHGTNIPFKRLSVVF
GEHTLLVTVSGQRVFVVKRQNRGREPIDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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