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Report for CCDS20116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20116.1 Public Mus musculus 6 Tmem176b 23 108 98 CCDS HistoryNCBI Gene:65963Re-query CCDS DB by CCDS ID:20116.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101429.10 ENSMUSP00000098972.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101429.10Link to Ensembl Protein Viewer:ENSMUSP00000098972.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101429Re-query CCDS DB by Protein ID:ENSMUSP00000098972
Original member Current member EBI ENSMUST00000164733.3 ENSMUSP00000128705.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164733.3Link to Ensembl Protein Viewer:ENSMUSP00000128705.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164733Re-query CCDS DB by Protein ID:ENSMUSP00000128705
Original member Current member EBI ENSMUST00000166247.7 ENSMUSP00000131064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166247.7Link to Ensembl Protein Viewer:ENSMUSP00000131064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166247Re-query CCDS DB by Protein ID:ENSMUSP00000131064
Original member Current member EBI ENSMUST00000204073.2 ENSMUSP00000144864.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204073.2Link to Ensembl Protein Viewer:ENSMUSP00000144864.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204073Re-query CCDS DB by Protein ID:ENSMUSP00000144864
Original member Current member EBI ENSMUST00000203355.2 ENSMUSP00000145395.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203355.2Link to Ensembl Protein Viewer:ENSMUSP00000145395.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203355Re-query CCDS DB by Protein ID:ENSMUSP00000145395
Original member Current member NCBI NM_001164207.1 NP_001157679.1 Accepted alive Link to Nucleotide Sequence:NM_001164207.1Link to Protein Sequence:NP_001157679.1Re-query CCDS DB by Nucleotide ID:NM_001164207Re-query CCDS DB by Protein ID:NP_001157679Link to BLAST:NP_001157679.1
Original member Current member NCBI NM_001164208.1 NP_001157680.1 Accepted alive Link to Nucleotide Sequence:NM_001164208.1Link to Protein Sequence:NP_001157680.1Re-query CCDS DB by Nucleotide ID:NM_001164208Re-query CCDS DB by Protein ID:NP_001157680Link to BLAST:NP_001157680.1
Original member Current member NCBI NM_001164209.2 NP_001157681.1 Accepted alive Link to Nucleotide Sequence:NM_001164209.2Link to Protein Sequence:NP_001157681.1Re-query CCDS DB by Nucleotide ID:NM_001164209Re-query CCDS DB by Protein ID:NP_001157681Link to BLAST:NP_001157681.1
Original member Current member NCBI NM_001286651.1 NP_001273580.1 Accepted alive Link to Nucleotide Sequence:NM_001286651.1Link to Protein Sequence:NP_001273580.1Re-query CCDS DB by Nucleotide ID:NM_001286651Re-query CCDS DB by Protein ID:NP_001273580Link to BLAST:NP_001273580.1
Original member Current member NCBI NM_001286652.1 NP_001273581.1 Accepted alive Link to Nucleotide Sequence:NM_001286652.1Link to Protein Sequence:NP_001273581.1Re-query CCDS DB by Nucleotide ID:NM_001286652Re-query CCDS DB by Protein ID:NP_001273581Link to BLAST:NP_001273581.1
Original member Current member NCBI NM_023056.4 NP_075543.1 Accepted alive Link to Nucleotide Sequence:NM_023056.4Link to Protein Sequence:NP_075543.1Re-query CCDS DB by Nucleotide ID:NM_023056Re-query CCDS DB by Protein ID:NP_075543Link to BLAST:NP_075543.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157679.1 263 Q9R1Q6 263 100% 0 0
NP_001157680.1 263 Q9R1Q6 263 100% 0 0
NP_001157681.1 263 Q9R1Q6 263 100% 0 0
NP_001273580.1 263 Q9R1Q6 263 100% 0 0
NP_001273581.1 263 Q9R1Q6 263 100% 0 0
NP_075543.1 263 Q9R1Q6 263 100% 0 0

Chromosomal Locations for CCDS 20116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48834053 48834139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48834507 48834626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48835445 48835675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48835906 48835962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48836227 48836337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48838172 48838357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGTCCAGAGCACAGTGACTGTGAATGGAGTCAAAGTGGCCTCCACACATCCCCAGTCCGCTCACATCA
GCATCCACATCCACCAAAAATCTGCTTTGGAGCAGCTGCTGGGAGCTGTGGGCTCCCTGAAGAAGTTTCT
CTCCTGGCCTCAGGCCAGAATCCACTATGGGCAGCTGTCTCTAGGGGTGACCCAGATATTGCTGGGGCTT
GTGAGCTGTGCTCTTGGAGTATGTCTCTACTTCGGGCCTTGGACTGAGCTGTGCGCCTTTGGCTGTGCTT
TCTGGTCGGGGTCTGTGGCAATTCTAGCTGGAGTTGGTACTATTGTCCATGAGAAGAGGCAGGGAAAACT
GTCCGGCCAGGTATCATGTCTCCTCCTCCTGGCTTGCATTGCCACAGCTGCAGCTGCTACCGTTCTGGGT
GTGAACAGCTTAATCAGGCAAACCAGTGTTCCCTACTACGTCGAGATCTTTTCCACATGCAACCCCTTGC
AATCAAGCATGGACCCTGGGTATGGGACAGTGCGATACAGTGATGATTCAGACTGGAAGACAGAGAGGTG
CAGAGAGTACCTGAACATGATGATGAACTTGTTCCTAGCGTTCTGCATCATGCTCACAGTGGTCTGTATC
CTGGAGATTGTTGTGTCTGTGGCTTCCCTGGGACTAAGTCTCCGAAGTATGTATGGCCGGAGCTCCCAGG
CCCTGAATGAAGAAGAGTCAGAGAGGAAGCTTCTTGATGGGCATCCAGCACCTGCGTCCCCGGCCAAAGA
GAAGATCCCTGCTATCCTGTGA

Translation (263 aa):
MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSWPQARIHYGQLSLGVTQILLGL
VSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLSGQVSCLLLLACIATAAAATVLG
VNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSDDSDWKTERCREYLNMMMNLFLAFCIMLTVVCI
LEIVVSVASLGLSLRSMYGRSSQALNEEESERKLLDGHPAPASPAKEKIPAIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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