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Report for CCDS5277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5277.1 Public Homo sapiens 6 SLC22A3 24 110 108 CCDS HistoryNCBI Gene:6581Re-query CCDS DB by CCDS ID:5277.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5277.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275300.3 ENSP00000275300.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000275300.3Link to Ensembl Protein Viewer:ENSP00000275300.2Re-query CCDS DB by Nucleotide ID:ENST00000275300Re-query CCDS DB by Protein ID:ENSP00000275300
Original member Current member NCBI NM_021977.4 NP_068812.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021977.4Link to Protein Sequence:NP_068812.1Re-query CCDS DB by Nucleotide ID:NM_021977Re-query CCDS DB by Protein ID:NP_068812Link to BLAST:NP_068812.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068812.1 556 O75751 556 100% 0 0

Chromosomal Locations for CCDS 5277.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 160348420 160348848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160397979 160398082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160407041 160407195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160408753 160408921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160410729 160410846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160436780 160436877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160436997 160437211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160442761 160442869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160443630 160443742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160447719 160447818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160450996 160451056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGCCCTCCTTCGACGAGGCGCTGCAGCGGGTGGGCGAGTTCGGGCGCTTCCAGAGGCGCGTGTTTTTGC
TG
CTGTGCCTGACGGGCGTCACCTTCGCCTTCCTCTTCGTCGGCGTGGTCTTCCTGGGCACGCAGCCCGA
C
CACTACTGGTGCCGCGGGCCAAGTGCCGCGGCGCTGGCCGAGCGCTGCGGCTGGAGCCCGGAGGAGGAG
TGG
AACCGCACGGCGCCCGCCTCCCGCGGCCCAGAGCCCCCCGAGCGCCGCGGCCGCTGCCAGCGCTACC
TC
CTGGAGGCGGCCAACGACAGCGCCTCCGCCACTAGCGCTCTCAGCTGCGCGGACCCACTCGCCGCCTT
C
CCCAACCGCTCGGCTCCCCTTGTGCCGTGCCGCGGCGGCTGGCGCTACGCCCAGGCCCACTCCACCATC
GTC
AGCGAGTTTGACCTTGTCTGTGTCAATGCGTGGATGCTGGACCTCACCCAAGCCATCCTGAACCTCG
GC
TTCCTGACTGGAGCATTCACCTTAGGCTATGCAGCAGACAGGTATGGCAGGATCGTCATTTACTTGCT
A
TCCTGCCTTGGTGTTGGCGTCACTGGGGTTGTGGTGGCCTTTGCACCAAACTTCCCTGTGTTTGTGATC
TTC
CGCTTCCTGCAAGGTGTATTTGGAAAGGGGACGTGGATGACTTGCTACGTGATTGTGACAGAAATAG
TA
GGTTCGAAACAAAGGAGGATTGTGGGAATCGTGATTCAAATGTTCTTTACCCTTGGAATCATAATTCT
C
CCTGGAATTGCCTACTTCATCCCCAACTGGCAAGGAATCCAGTTAGCCATCACGCTGCCCAGCTTTCTC
TTC
CTCCTTTATTACTGGGTGGTCCCTGAGTCTCCCCGTTGGCTGATTACTCGGAAGAAAGGAGATAAAG
CA
TTACAGATCCTGAGACGCATTGCTAAGTGCAATGGGAAATACCTCTCATCAAATTACTCAGAGATCAC
T
GTTACAGATGAGGAAGTTAGTAATCCATCCTTTTTAGATCTGGTGAGAACTCCCCAAATGAGGAAATGC
ACA
CTTATTCTTATGTTTGCTTGGTTCACAAGCGCAGTGGTGTATCAAGGACTTGTCATGCGCCTGGGAA
TT
ATAGGGGGCAACCTCTATATAGACTTTTTCATCTCGGGCGTGGTGGAACTGCCAGGAGCTCTCTTGAT
C
TTACTAACCATTGAGCGCCTTGGACGACGCCTCCCCTTTGCGGCAAGCAATATAGTGGCAGGGGTGGCA
TGC
CTTGTCACTGCGTTCTTACCAGAAGGAATAGCATGGTTGAGGACCACAGTGGCTACATTGGGAAGAC
TA
GGGATAACCATGGCCTTTGAAATTGTTTATTTGGTAAATTCAGAATTGTACCCAACAACATTACGAAA
T
TTCGGAGTTTCGCTCTGTTCAGGTCTGTGTGATTTTGGGGGAATCATAGCCCCATTTCTGCTCTTTCGG
CTA
GCAGCCGTGTGGCTAGAACTACCTCTGATCATCTTTGGTATCCTGGCATCCATCTGTGGTGGCCTTG
TG
ATGCTTTTGCCTGAAACCAAGGGTATTGCCTTGCCAGAGACAGTGGATGATGTAGAAAAACTTGGCAG
T
CCACATTCCTGTAAATGTGGCAGGAATAAGAAAACCCCAGTTTCCCGCTCTCACCTTTGA


Translation (556 aa):
MPSFDEALQRVGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGTQPDHYWCRGPSAAALAERCGWSPEEE
W
NRTAPASRGPEPPERRGRCQRYLLEAANDSASATSALSCADPLAAFPNRSAPLVPCRGGWRYAQAHSTI
V
SE
FDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVI
F
RFLQGVFGKGTWMTCYVI
VTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFL
F
LLYY
WVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNYSEITVTDEEVSNPSFLDLVRTPQMRKC
T
LILMFA
WFTSAVVYQGLVMRLGIIGGNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIVAGVA
C
LVTAFLPE
GIAWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFLLFR
L
AAVWLELPLIIF
GILASICGGLVMLLPETKGIALPETVDDVEKLGSPHSCKCGRNKKTPVSRSHL



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser