NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19074.1 Public Mus musculus 5 Cldn12 23 108 98 CCDS HistoryNCBI Gene:64945Re-query CCDS DB by CCDS ID:19074.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060947.13 ENSMUSP00000061928.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060947.13Link to Ensembl Protein Viewer:ENSMUSP00000061928.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060947Re-query CCDS DB by Protein ID:ENSMUSP00000061928
Original member Current member EBI ENSMUST00000115445.7 ENSMUSP00000111105.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115445.7Link to Ensembl Protein Viewer:ENSMUSP00000111105.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115445Re-query CCDS DB by Protein ID:ENSMUSP00000111105
Original member Current member EBI ENSMUST00000115446.7 ENSMUSP00000111106.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115446.7Link to Ensembl Protein Viewer:ENSMUSP00000111106.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115446Re-query CCDS DB by Protein ID:ENSMUSP00000111106
Original member Current member EBI ENSMUST00000179804.7 ENSMUSP00000136988.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179804.7Link to Ensembl Protein Viewer:ENSMUSP00000136988.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179804Re-query CCDS DB by Protein ID:ENSMUSP00000136988
Original member NCBI NM_001193659.1 NP_001180588.1 Updated not alive Link to Nucleotide Sequence:NM_001193659.1Link to Protein Sequence:NP_001180588.1Re-query CCDS DB by Nucleotide ID:NM_001193659Re-query CCDS DB by Protein ID:NP_001180588
Current member NCBI NM_001193659.2 NP_001180588.1 Accepted alive Link to Nucleotide Sequence:NM_001193659.2Link to Protein Sequence:NP_001180588.1Re-query CCDS DB by Nucleotide ID:NM_001193659Re-query CCDS DB by Protein ID:NP_001180588Link to BLAST:NP_001180588.1
Original member NCBI NM_001193660.1 NP_001180589.1 Updated not alive Link to Nucleotide Sequence:NM_001193660.1Link to Protein Sequence:NP_001180589.1Re-query CCDS DB by Nucleotide ID:NM_001193660Re-query CCDS DB by Protein ID:NP_001180589
Current member NCBI NM_001193660.2 NP_001180589.1 Accepted alive Link to Nucleotide Sequence:NM_001193660.2Link to Protein Sequence:NP_001180589.1Re-query CCDS DB by Nucleotide ID:NM_001193660Re-query CCDS DB by Protein ID:NP_001180589Link to BLAST:NP_001180589.1
Original member NCBI NM_001193661.1 NP_001180590.1 Updated not alive Link to Nucleotide Sequence:NM_001193661.1Link to Protein Sequence:NP_001180590.1Re-query CCDS DB by Nucleotide ID:NM_001193661Re-query CCDS DB by Protein ID:NP_001180590
Current member NCBI NM_001193661.2 NP_001180590.1 Accepted alive Link to Nucleotide Sequence:NM_001193661.2Link to Protein Sequence:NP_001180590.1Re-query CCDS DB by Nucleotide ID:NM_001193661Re-query CCDS DB by Protein ID:NP_001180590Link to BLAST:NP_001180590.1
Original member NCBI NM_022890.2 NP_075028.1 Updated not alive Link to Nucleotide Sequence:NM_022890.2Link to Protein Sequence:NP_075028.1Re-query CCDS DB by Nucleotide ID:NM_022890Re-query CCDS DB by Protein ID:NP_075028
Current member NCBI NM_022890.3 NP_075028.1 Accepted alive Link to Nucleotide Sequence:NM_022890.3Link to Protein Sequence:NP_075028.1Re-query CCDS DB by Nucleotide ID:NM_022890Re-query CCDS DB by Protein ID:NP_075028Link to BLAST:NP_075028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180588.1 244 Q9ET43 244 100% 0 0
NP_001180589.1 244 Q9ET43 244 100% 0 0
NP_001180590.1 244 Q9ET43 244 100% 0 0
NP_075028.1 244 Q9ET43 244 100% 0 0

Chromosomal Locations for CCDS 19074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 5507691 5508425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGGCTGCCGAGATGTCCACGCAGCCACCGTCCTGTCCTTCCTGTGTGGTATTGCCTCTGTCGCAGGCC
TCTTTGCGGGGACTCTGCTTCCTAACTGGAGGAAACTGCGGCTGATCACATTCAACAGAAACGAGAAGAA
CCTGACGATTTACACGGGCCTGTGGGTGAAGTGTGCCCGGTATGATGGAAGCAGTGACTGCCTGATGTAC
GACCGTACGTGGTACCTGTCGGTTGACCAGCTGGACCTGCGTGTCCTCCAGTTTGCCCTGCCTCTCAGCA
TCGTGATCGCAATGGGTGCCTTGCTACTCTGCCTGATTGGAATGTGTAACACGGCCTTCAATTCTTCCGT
GCCTAACATCAAACTGGCCAAGTGTCTGGTCAATAGTGCAGGCTGCCACCTGGTGGCCGGACTCCTGTTT
TTTCTGGCAGGTACCGTGAGCCTCTCTCCGTCCATCTGGGCCATCTTTTATAACAGCCATCTCAACAGGA
AGTTTGAGCCGGTCTTTACCTTTGACTATGCAGTATTTGTCACTATTGCTAGCTCAGGGGGTCTGTTTAT
GACTGCTCTCCTGCTGTTCGTTTGGTATTGTGCATGCAAGTCTTTGTCCTCTCCTTTCTGGCAACCGCTG
TACTCTCACGCTCCCGGGATGCACACTTACTCACAGCCCTATTCATCACGGTCCCGCCTCTCTGCCATTG
AAATCGACATTCCAGTAGTCTCACACAGCACTTAA

Translation (244 aa):
MGCRDVHAATVLSFLCGIASVAGLFAGTLLPNWRKLRLITFNRNEKNLTIYTGLWVKCARYDGSSDCLMY
DRTWYLSVDQLDLRVLQFALPLSIVIAMGALLLCLIGMCNTAFNSSVPNIKLAKCLVNSAGCHLVAGLLF
FLAGTVSLSPSIWAIFYNSHLNRKFEPVFTFDYAVFVTIASSGGLFMTALLLFVWYCACKSLSSPFWQPL
YSHAPGMHTYSQPYSSRSRLSAIEIDIPVVSHST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH