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Report for CCDS16998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16998.1 Public Mus musculus 2 Lpin3 23 108 98 CCDS HistoryNCBI Gene:64899Re-query CCDS DB by CCDS ID:16998.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040872.12 ENSMUSP00000043053.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040872.12Link to Ensembl Protein Viewer:ENSMUSP00000043053.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040872Re-query CCDS DB by Protein ID:ENSMUSP00000043053
Original member Current member EBI ENSMUST00000109456.8 ENSMUSP00000105082.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109456.8Link to Ensembl Protein Viewer:ENSMUSP00000105082.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109456Re-query CCDS DB by Protein ID:ENSMUSP00000105082
Original member Current member NCBI NM_001199118.1 NP_001186047.1 Accepted alive Link to Nucleotide Sequence:NM_001199118.1Link to Protein Sequence:NP_001186047.1Re-query CCDS DB by Nucleotide ID:NM_001199118Re-query CCDS DB by Protein ID:NP_001186047Link to BLAST:NP_001186047.1
Original member Current member NCBI NM_022883.3 NP_075021.1 Accepted alive Link to Nucleotide Sequence:NM_022883.3Link to Protein Sequence:NP_075021.1Re-query CCDS DB by Nucleotide ID:NM_022883Re-query CCDS DB by Protein ID:NP_075021Link to BLAST:NP_075021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186047.1 848 Q99PI4 848 100% 0 0
NP_075021.1 848 Q99PI4 848 100% 0 0

Chromosomal Locations for CCDS 16998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 160892197 160892388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160893994 160894089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160895323 160895573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160895751 160895831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160896750 160896870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160897015 160897366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160898630 160898729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160898869 160899029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160899570 160899663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160899760 160899829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160901658 160901750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160901833 160901876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160902563 160902701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160903603 160903751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160903924 160904010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160904483 160904635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160904800 160904914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160905003 160905106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 160905258 160905402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2547 nt):
ATGAACTATGTAGGGCAGCTGGCAGAGACAGTGTTTGGAACGGTTAAGGAGCTGTACAGGGGCCTGAACC
CGGCCACACTGAGCGGCGGCATCGATGTGCTGGTGGTAAGGCAGCGGGACGGCTCCTTCCGATGCTCACC
CTTCCACGTGCGCTTCGGCAAGCTGGGTGTCCTGCGGTCACGGGAGAAGGTGGTGGACATTGAGATCAAT
GGTGAGCCCGTGGACCTGCATATGAAACTGGGGGACAGCGGCGAGGCCTTCTTTGTCCAGGAGCTGGACA
GTGATGAGGAAGATGTGCCTCCTCGTCTGTGCACCTCACCCATCCCATGGGGAGGCCTGTCGGGCTTTCC
CTCAGACTCCCAGATAGGCACAGCCAGTGAGCCTGAGGGCCTAGTCATTACAGGGCGGAGAAAGAGGCGG
CGAAGGAGGAAACCGAGGCGCAGGGAGGAGGATGCCGTGGACTCCAGTTCTGAAGAGTTGGAGGCAGGTG
CGGAGAGTGAGCTGACATTGCTGGAAAAGCCAACACCAGAGTCCCCAAGTGCTCAGGAGGCAGAGGAGCC
CTCATCGCAGCCTAAGGACATACACCCCTACTCCGATGGCGAGTGTACCCCACAGGCCAACCTCTCCTCT
GGTGACCTAATGTCCCCTAAGAGTGACTCAGAGCTAGAGCTGCGGTCCTTGGAGCCCAGTCCTCTGAGAG
CTGAGTCTCACATGCAGTGGGTCTGGGGCAGACTGCCTAAGGTGGCGAAAGCTGAACGGCCTGAGTTCTC
GTTGATCCTTGAAAGTATGGCTGAGGCGATCTGTGCTCTTCCTGAGGAGCCTAGCCCTTCCTCCTCTCCC
TCTGAGGCTGGTGTGGACACTTTGAGTCCCCCGGTGCTGCACCCAGGAGTCAGGGCTGATACATTCCATC
CTGCTGTGGAGGCCCATTGTGAGGAAACTGCAGTGGATTCTCCTCTTGCTGCCCCAGAGAGTAAGGAAAC
CAAGACTCAGAACTCCAGGGGTGCAGGCCACCCTCCTGCCACTAAATCATGGAGCTGGACTACTCCAGAG
AGCCATACTCCCTCTGGGCATCCACAAGTTTCCAGGGGAAAGGGTTCCCTGAAGAGAAACCAGCACTTGG
GCCCAAGTGACATCTACCTGGATGATCTACCCTCCCTGGACTCTGAGAACGTAGCCCTTTATTTCCCCAA
GAGTGAGTATGGGATGGGGGCCAGAAGGTGGAGTGAGCCCAGCAACCAGAAGCTCCTGGAGAGCCCCAAC
CCTGAGCACATAGCAGAATGCACTCTGGACTCAGTGGACAAAATAGAATTGTCCCTTTGTGGTGGACTGG
CTGACAACCGAGATATCTCCCTGGAGAAGTTCACCCAGCACATGGTCTCCTATGAAGACCTCACTAAGAA
TCCCGGGCTCCTGGATGACCCAAACCTCGTGGTGAAAATCAACGAGAAGCATTACAACTGGGCTGTGGCT
GCGCCCATGATTCTTTCTCTGCAAGCCTTCCAGAAGAACTTACCTGAGAGCACTGTGGACAAGCTGGAGA
AGGAGAAGATGCCCCGGAAGGGTGGGCGATGGTGGTTTTCCTGGAGACGCAGGGACTTCCCAGCTGAGGA
GCACAGTTCCCAGAGGGAGAAAGCCGCAACCAGGAAACAGCAGGGAGAGAAGACAGAAGTCTTAAGCAGC
GATGACGATGTCCCAGACAGCCCTGTGATCCTTGAAGTCCCCCCACTGCCATCCTCCACTCCAGGCTATG
TCCCGACCTACAAGAAGTCTCTTCGTCTCTCTTCTGATCAGATTCGGTGTCTAAACCTGAACGAAGGAGC
TAACGATGTGGTCTTCAGTGTGACGACCCAGTACCAAGGCACCTGCCGTTGCAAAGCCACCATCTACCTG
TGGAATTGGGATGACAAGGTGGTCATCTCTGACATAGATGGCACCATCACCAAGTCGGATGCTCTGGGCC
ACATTCTGCCCCAGCTGGGGAAAGACTGGACACACCAGGGCATTACTAGTCTCTACCACAAGATCCATCT
AAATGGGTACAAGTTCCTGTACTGCTCAGCACGGGCTATCGGCATGGCTGACCTCACCAAGGGGTACTTG
CAGTGGGTGAGCGAGCATGGCTGTGGCCTTCCTAAGGGCCCCATCTTGCTATCTCCCAGCAGCCTCTTCT
CCGCTCTCCACAGGGAGGTAATCGAGAAAAAGCCGGAGGTGTTCAAGGTTGCCTGCCTGAGTGATATCCA
GCAGCTGTTTCTGCCCCAAAGACAGCCCTTCCATGCTGCCTTTGGGAACAGGCCCAATGATGTTTTCGCC
TACAGGCAGGTGGGCCTCCCTGAGTCCCGAATCTTCACAGTCAACCCCCGGGGGGAGCTCATCCAGGAGC
TCATAAAGAGCCACAAATCCACGTACCAGCGGCTCGGAGAGGTGGTTGAGCTGCTCTTCCCACCTGTGGT
GCGCGGTCCCAGCACAGACCTGGCCAGCCCTGAATACAGCAACCTCAGCTATTGGCGGAAGCCACTGCCG
TATGTGGACTTTGAGGCCCTGGCTTGA

Translation (848 aa):
MNYVGQLAETVFGTVKELYRGLNPATLSGGIDVLVVRQRDGSFRCSPFHVRFGKLGVLRSREKVVDIEIN
GEPVDLHMKLGDSGEAFFVQELDSDEEDVPPRLCTSPIPWGGLSGFPSDSQIGTASEPEGLVITGRRKRR
RRRKPRRREEDAVDSSSEELEAGAESELTLLEKPTPESPSAQEAEEPSSQPKDIHPYSDGECTPQANLSS
GDLMSPKSDSELELRSLEPSPLRAESHMQWVWGRLPKVAKAERPEFSLILESMAEAICALPEEPSPSSSP
SEAGVDTLSPPVLHPGVRADTFHPAVEAHCEETAVDSPLAAPESKETKTQNSRGAGHPPATKSWSWTTPE
SHTPSGHPQVSRGKGSLKRNQHLGPSDIYLDDLPSLDSENVALYFPKSEYGMGARRWSEPSNQKLLESPN
PEHIAECTLDSVDKIELSLCGGLADNRDISLEKFTQHMVSYEDLTKNPGLLDDPNLVVKINEKHYNWAVA
APMILSLQAFQKNLPESTVDKLEKEKMPRKGGRWWFSWRRRDFPAEEHSSQREKAATRKQQGEKTEVLSS
DDDVPDSPVILEVPPLPSSTPGYVPTYKKSLRLSSDQIRCLNLNEGANDVVFSVTTQYQGTCRCKATIYL
WNWDDKVVISDIDGTITKSDALGHILPQLGKDWTHQGITSLYHKIHLNGYKFLYCSARAIGMADLTKGYL
QWVSEHGCGLPKGPILLSPSSLFSALHREVIEKKPEVFKVACLSDIQQLFLPQRQPFHAAFGNRPNDVFA
YRQVGLPESRIFTVNPRGELIQELIKSHKSTYQRLGEVVELLFPPVVRGPSTDLASPEYSNLSYWRKPLP
YVDFEALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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