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Report for CCDS15652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15652.1 Public Mus musculus 2 Suv39h2 23 108 98 CCDS HistoryNCBI Gene:64707Re-query CCDS DB by CCDS ID:15652.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027956.8 ENSMUSP00000027956.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027956.8Link to Ensembl Protein Viewer:ENSMUSP00000027956.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000027956Re-query CCDS DB by Protein ID:ENSMUSP00000027956
Original member Current member NCBI NM_022724.4 NP_073561.2 Accepted alive Link to Nucleotide Sequence:NM_022724.4Link to Protein Sequence:NP_073561.2Re-query CCDS DB by Nucleotide ID:NM_022724Re-query CCDS DB by Protein ID:NP_073561Link to BLAST:NP_073561.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073561.2 477 Q9EQQ0 477 99.5807% 0 2

Chromosomal Locations for CCDS 15652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 3458623 3458729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3459757 3459886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3462481 3462627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3464267 3464926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3472502 3472647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 3474703 3474946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGCGGCGGCCAGGGCCAAGGCACGGGGCAGTGAGGCAGGAGCGCGGTGTCACCGGGCTCCAGGTCCGC
CCCCGAGGCCCAAGGCCAGGCGAACGGCGAGACGCCGCCGCGCGGAGACCCTGACGGCGCGACGCTCGCG
GCCGTCTGCGGGCGAGAGGCGCGCCGGCTCCCAGCGAGCGTGGTCCGGAGCTCCGCGGGCCGCGGTCTTT
GGCGACGAGTGTGCACGAGGTGCCTTATTCAAGGCCTGGTGTGTGCCTTGCCTAGTTTCACTTGATACTC
TCCAGGAATTATGTAGAAAAGAAAAGCTCACATGTAAATCGATTGGAATCACCAAAAGGAATCTAAACAA
TTATGAGGTGGAGTACTTGTGTGACTACAAGGTAGCAAAGGGTGTGGAATATTATCTTGTAAAATGGAAA
GGATGGCCAGATTCTACAAACACCTGGGAGCCCTTGAGAAACCTCAGGTGTCCACAGCTCCTGCGGCAGT
TCTCTGATGACAAGAAGACTTACTTAGCTCAGGAAAGGAAATGCAAGGCTGTCAATTCAAAATCCTTGCA
ACCTGCAATTGCTGAGTATATTGTACAGAAAGCTAAGCAAAGAATAGCTCTGCAGAGATGGCAAGATTAC
CTCAACAGAAGAAAGAACCATAAGGGGATGATATTTGTTGAAAACACTGTTGACTTGGAGGGCCCACCTT
TAGACTTCTACTACATTAACGAGTACAGGCCAGCTCCCGGGATCAGCATAAACAGTGAAGCCACCTTTGG
ATGTTCATGTACAGACTGCTTCTTTGACAAGTGTTGTCCTGCTGAAGCTGGAGTTGTGTTGGCTTATAAT
AAGAAGCAACAAATTAAAATCCAACCAGGCACTCCCATCTACGAATGCAACTCAAGGTGTCGATGTGGAC
CTGAATGTCCCAATAGGATTGTACAAAAAGGCACACAATATTCACTGTGCATCTTTAGAACTAGCAATGG
CTGTGGTTGGGGTGTAAAAACCCTTGTGAAGATTAAAAGAATGAGTTTTGTCATGGAATATGTTGGAGAG
GTGATCACAAGTGAAGAGGCCGAGAGACGGGGACAGTTCTATGACAACAAAGGGATCACCTACCTCTTTG
ACCTGGACTACGAGTCTGATGAGTTCACAGTGGATGCAGCTCGATATGGAAACGTATCCCATTTTGTGAA
TCATAGTTGTGACCCAAATCTTCAGGTGTTTAGTGTTTTCATCGATAACCTTGATACTCGGCTGCCCAGG
ATAGCATTGTTCTCTACAAGAACCATAAACGCTGGAGAAGAGCTGACTTTTGACTATCAAATGAAAGGTT
CTGGAGAAGCATCTTCAGACTCCATTGACCACAGCCCTGCCAAAAAAAGGGTCAGAACCCAATGTAAATG
TGGAGCCGAGACTTGCAGAGGTTACCTCAACTGA

Translation (477 aa):
MAAARAKARGSEAGARCHRAPGPPPRPKARRTARRRRAETLTARRSRPSAGERRAGSQRAWSGAPRAAVF
GDECARGALFKAWCVPCLVSLDTLQELCRKEKLTCKSIGITKRNLNNYEVEYLCDYKVAKGVEYYLVKWK
GWPDSTNTWEPLRNLRCPQLLRQFSDDKKTYLAQERKCKAVNSKSLQPAIAEYIVQKAKQRIALQRWQDY
LNRRKNHKGMIFVENTVDLEGPPLDFYYINEYRPAPGISINSEATFGCSCTDCFFDKCCPAEAGVVLAYN
KKQQIKIQPGTPIYECNSRCRCGPECPNRIVQKGTQYSLCIFRTSNGCGWGVKTLVKIKRMSFVMEYVGE
VITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVFSVFIDNLDTRLPR
IALFSTRTINAGEELTFDYQMKGSGEASSDSIDHSPAKKRVRTQCKCGAETCRGYLN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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