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Report for CCDS28885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28885.1 Public Mus musculus 17 Slc5a7 23 108 98 CCDS HistoryNCBI Gene:63993Re-query CCDS DB by CCDS ID:28885.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095712.4 ENSMUSP00000093379.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095712.4Link to Ensembl Protein Viewer:ENSMUSP00000093379.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095712Re-query CCDS DB by Protein ID:ENSMUSP00000093379
Original member Current member NCBI NM_022025.4 NP_071308.2 Accepted alive Link to Nucleotide Sequence:NM_022025.4Link to Protein Sequence:NP_071308.2Re-query CCDS DB by Nucleotide ID:NM_022025Re-query CCDS DB by Protein ID:NP_071308Link to BLAST:NP_071308.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071308.2 580 Q8BGY9 580 100% 0 0

Chromosomal Locations for CCDS 28885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 54276518 54277147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54278675 54278892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54281723 54281876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54284162 54284305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54287355 54287503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54292936 54293091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54293814 54293927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54296959 54297136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGTCTTTCCACGTAGAAGGACTGGTAGCTATTATCCTCTTCTACCTCCTTATATTTCTGGTTGGAATAT
GGGCTGCATGGAAAACCAAAAACAGCGGCAACCCAGAAGAGCGCAGTGAAGCCATCATAGTCGGGGGCCG
TGACATTGGTTTGTTGGTTGGTGGTTTTACCATGACAGCCACCTGGGTTGGAGGAGGCTACATCAATGGG
ACAGCAGAAGCAGTGTATGGGCCAGGTTGTGGTCTAGCTTGGGCTCAGGCACCCATTGGATATTCTCTGA
GTCTAATTTTAGGTGGTCTGTTTTTTGCGAAACCTATGCGTTCCAAGGGATATGTGACTATGTTAGACCC
ATTTCAACAGATCTATGGAAAGCGCATGGGTGGGCTGCTCTTCATCCCTGCACTGATGGGAGAGATGTTC
TGGGCTGCAGCAATTTTCTCTGCATTAGGGGCCACCATCAGCGTGATCATTGATGTGGATGTGAACATAT
CGGTCATTGTCTCTGCACTCATTGCCATTCTTTATACCCTAGTGGGTGGGCTCTACTCTGTGGCATATAC
TGATGTTGTCCAGCTATTCTGCATTTTTATAGGACTGTGGATCAGTGTCCCTTTTGCCCTGTCACATCCT
GCAGTCACCGACATCGGATTCACAGCTGTGCATGCTAAATACCAGAGTCCCTGGCTGGGAACCATTGAAT
CAGTTGAAGTCTACACCTGGCTTGATAATTTTCTGTTATTGATGCTGGGTGGAATCCCATGGCAAGCCTA
CTTCCAGAGGGTCCTCTCTTCATCCTCAGCCACCTATGCTCAGGTACTGTCCTTCCTGGCAGCTTTTGGG
TGCCTGGTGATGGCTCTACCCGCCATATGCATAGGAGCTATTGGAGCTTCCACAGACTGGAACCAGACTG
CCTACGGGTATCCAGATCCCAAGACTAAGGAGGAAGCAGACATGATTCTCCCGATCGTTCTGCAGTACCT
CTGCCCTGTGTACATCTCCTTCTTTGGGCTTGGTGCTGTTTCAGCTGCTGTCATGTCCTCAGCTGACTCG
TCCATCCTGTCGGCGAGTTCTATGTTTGCTCGGAATATCTACCAGCTTTCCTTCAGACAAAATGCATCAG
ACAAGGAAATTGTGTGGGTCATGAGGATCACTGTGCTTGTGTTCGGAGCATCTGCAACAGCCATGGCTTT
GCTGACGAAGACTGTGTATGGGCTCTGGTACCTGAGCTCTGACCTTGTCTACATCATCATCTTCCCACAG
CTGCTCTGTGTACTCTTCATCAAAGGAACCAACACTTATGGGGCAGTTGCTGGTTATATTTTTGGACTAT
TCCTGAGAATTACTGGAGGAGAGCCATATCTATACTTGCAGCCCTTAATCTTCTACCCTGGTTATTACTC
TGACAAGAATGGTATATACAATCAGAGGTTCCCATTTAAAACTCTCTCCATGGTTACCTCATTCTTTACC
AACATTTGTGTTTCTTATCTAGCCAAGTATCTATTTGAAAGTGGAACCTTGCCTCCAAAATTAGATGTAT
TTGATGCTGTTGTCGCAAGGCACAGTGAAGAGAACATGGACAAGACCATTCTAGTCAGAAATGAAAATAT
CAAATTAAATGAACTTGCACCTGTGAAACCTCGGCAGAGCCTAACCCTCAGTTCAACTTTCACCAATAAG
GAGGCCCTCCTTGATGTTGATTCCAGTCCGGAGGGGTCTGGGACTGAAGATAACTTACAATGA

Translation (580 aa):
MSFHVEGLVAIILFYLLIFLVGIWAAWKTKNSGNPEERSEAIIVGGRDIGLLVGGFTMTATWVGGGYING
TAEAVYGPGCGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMF
WAAAIFSALGATISVIIDVDVNISVIVSALIAILYTLVGGLYSVAYTDVVQLFCIFIGLWISVPFALSHP
AVTDIGFTAVHAKYQSPWLGTIESVEVYTWLDNFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFG
CLVMALPAICIGAIGASTDWNQTAYGYPDPKTKEEADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADS
SILSASSMFARNIYQLSFRQNASDKEIVWVMRITVLVFGASATAMALLTKTVYGLWYLSSDLVYIIIFPQ
LLCVLFIKGTNTYGAVAGYIFGLFLRITGGEPYLYLQPLIFYPGYYSDKNGIYNQRFPFKTLSMVTSFFT
NICVSYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVRNENIKLNELAPVKPRQSLTLSSTFTNK
EALLDVDSSPEGSGTEDNLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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